View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_13 (Length: 589)
Name: NF18178_high_13
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 54 - 572
Target Start/End: Original strand, 43015792 - 43016310
Alignment:
| Q |
54 |
cctctaatttttattggtaatttaaatttcaataaagcatagcatttgattggaacatggatatataggcacgttaatttctaaagaaatgaacgtgatg |
153 |
Q |
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| T |
43015792 |
cctctaatttttattggtaatttaaatttcaataaagcatagcatttgattggaacatggatgtataggcacgttaatttctaaagaaatgaacgtgatg |
43015891 |
T |
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| Q |
154 |
tttcactagcagctatacattattaactttataattatatgaaatttcaacgttcggttggtaagtatacgcttttgcacaaaaagatgaaagaacatgc |
253 |
Q |
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| T |
43015892 |
tttcactagcagctatacattattaactttataattatatgaaatttcaacgttcggttggtaagtatacgcttttgcacaaaaagatgaaagaacatgc |
43015991 |
T |
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| Q |
254 |
atgaaattaagggttaaggaatgtgtagatcgagtgttgacatgattaataaacattgcttgcatacaccgaaaaattaaatttgtatggacctgaccgg |
353 |
Q |
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| T |
43015992 |
atgaaattaagggttaaggaatgtgtatatcgagtgttgacatgattaataaacattgcttgcatacaccgcaaaattaaatttgtatggacctgaccgg |
43016091 |
T |
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| Q |
354 |
atgataaatcagtgtcagtagctagctaaccaacgttggtttacccacctagctaagaaaagaaaatgtaacattataaatagataaatatagttttgat |
453 |
Q |
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| T |
43016092 |
atgataaatcagtgtcagtagctagctaaccaacgttggtttacccacctagctaagaaaagaaaatgtaacattataaataaataaatatagttttgat |
43016191 |
T |
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| Q |
454 |
gatgattgatacaaccattatatatattgtaggttggaataggagaaggttctacaacaagagaaatgcaagcatcaggaggctcatgtgatcaggaagt |
553 |
Q |
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| T |
43016192 |
gatgattgatacaaccattatatatattgtaggttggaataggagaaggttctacaacaagagaaatgcaagcatcaggaggctcatgtgatcaggaagt |
43016291 |
T |
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| Q |
554 |
gcatgaaagacagcatcat |
572 |
Q |
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| T |
43016292 |
gcatgaaagacagcatcat |
43016310 |
T |
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