View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_135 (Length: 239)
Name: NF18178_high_135
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_135 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 24129966 - 24129777
Alignment:
| Q |
1 |
caagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatatgtggctaccagattaacctaatccactatagcagtta |
100 |
Q |
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| T |
24129966 |
caagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatatgtggcaaccagattaacctaatccactatagcagtta |
24129867 |
T |
|
| Q |
101 |
cagatctttagtccttaacctattccaactatagcagttacaaagcttcactccttgaaacattttcaaaagagtcaagcagtttccacc |
190 |
Q |
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| T |
24129866 |
cagatctttagtccttaacctattccaactatagcagttacaaagcttcactccttgaaacattttcaaaagagtcaagcagtttccacc |
24129777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 24147961 - 24147793
Alignment:
| Q |
19 |
cattattgctgtcaaattcggcttacacttaaaattgactaatatgtggctaccagattaacctaatccactatagcagttacagatctttagtccttaa |
118 |
Q |
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|||||||| |||||||||||| |||| |||||||||||||||||||| | ||||||||||| |||||| ||| ||||||| | ||| ||||||||| |
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| T |
24147961 |
cattattgttgtcaaattcggtttac--ttaaaattgactaatatgtgctaagaagattaacctagtccactgtagaagttacatagcttcagtccttaa |
24147864 |
T |
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| Q |
119 |
cctattccaactatagcagttacaaagcttcactccttgaaacattttcaaaagagtcaagcagtttccacc |
190 |
Q |
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| T |
24147863 |
cctattcca-ctatagcagttacaaagcttcattccctgaaacattttcaaaagagtgaagcagtttccacc |
24147793 |
T |
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