View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_high_136 (Length: 239)

Name: NF18178_high_136
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_high_136
NF18178_high_136
[»] chr5 (2 HSPs)
chr5 (7-209)||(32915448-32915649)
chr5 (78-199)||(35912561-35912681)
[»] chr4 (1 HSPs)
chr4 (75-209)||(51410281-51410414)
[»] chr7 (2 HSPs)
chr7 (75-182)||(23571984-23572090)
chr7 (144-202)||(41081891-41081948)
[»] chr2 (1 HSPs)
chr2 (78-209)||(41113020-41113150)
[»] chr8 (1 HSPs)
chr8 (77-209)||(3049180-3049311)
[»] chr3 (1 HSPs)
chr3 (74-209)||(33702076-33702206)
[»] chr6 (1 HSPs)
chr6 (76-198)||(17165041-17165162)
[»] scaffold0041 (1 HSPs)
scaffold0041 (144-202)||(99023-99080)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 32915649 - 32915448
Alignment:
Q  7 atatattgatgagaggcttgtttacaacaaaacaactgagaattcatgaaacaattgttccataagtgcagtagcggagtcagaaattttgaatagtagg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||| ||| ||||||||||||||||    
T  32915649 atatattgatgagaggcttgtttacaacaaaacaactgagaattcatgaaacaattgttccataaggg-attagaggagccaggaattttgaatagtagg 32915551  T
Q  107 aggcaccattgcacgaaatttgttaggaaggagagtttgtgtggttgattttacggttccgtgaaataaggaggaatggtttttatttttctcattgaaa 206  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||| |    
T  32915550 gggcaccattgcacgaaatttgttaggaaggagagtttgtgtggttgattttacggttccatgaaacaaggaggaatggttttcatttttttcattgaga 32915451  T
Q  207 aag 209  Q
    |||    
T  32915450 aag 32915448  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 35912681 - 35912561
Alignment:
Q  78 tagcggagtcagaaattttgaatagtaggaggcaccattgcacgaaatttgttaggaaggagagtttgtgtggttgattttacggttccgtgaaataagg 177  Q
    |||||||| ||||||||||||||||| || | || |||| ||| ||||||||| ||| ||||||||  ||||||||||||||||||||| ||||| || |    
T  35912681 tagcggagccagaaattttgaatagttgg-gacatcattacacaaaatttgttgggatggagagttgatgtggttgattttacggttccatgaaacaaag 35912583  T
Q  178 aggaatggtttttatttttctc 199  Q
    ||||| |||||| |||||||||    
T  35912582 aggaagggttttcatttttctc 35912561  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 51410281 - 51410414
Alignment:
Q  75 cagtagcggagtcagaaattttgaatagtaggaggcaccattgcacgaaatttgttaggaaggagagtttgtgtggttgattttacggttccgtgaaata 174  Q
    ||||||||||| ||||||||||||  ||| || ||||||||||||||||||||||| ||| |||||||| |||||||||||||| |  |||| |||||||    
T  51410281 cagtagcggagccagaaattttgagcagtggg-ggcaccattgcacgaaatttgttgggacggagagttggtgtggttgatttttcaattccatgaaata 51410379  T
Q  175 aggaggaatggtttttatttttctcattgaaaaag 209  Q
    |||||||| |||||| |||||||||||||| ||||    
T  51410380 aggaggaagggttttcatttttctcattgagaaag 51410414  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 23571984 - 23572090
Alignment:
Q  75 cagtagcggagtcagaaattttgaatagtaggaggcaccattgcacgaaatttgttaggaaggagagtttgtgtggttgattttacggttccgtgaaata 174  Q
    ||||||||||| ||||||||||||||||| || |||||||||  |||||||||||| ||| |||||||| ||||||||||||| |||||||| ||||| |    
T  23571984 cagtagcggaggcagaaattttgaatagtggg-ggcaccattatacgaaatttgttgggagggagagttggtgtggttgatttaacggttccatgaaaca 23572082  T
Q  175 aggaggaa 182  Q
    ||||||||    
T  23572083 aggaggaa 23572090  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 41081891 - 41081948
Alignment:
Q  144 tgtgtggttgattttacggttccgtgaaataaggaggaatggtttttatttttctcatt 202  Q
    ||||||||||||||| || |||| ||||||||||||||| |||||| ||||||||||||    
T  41081891 tgtgtggttgatttt-cgattccatgaaataaggaggaaaggttttcatttttctcatt 41081948  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 41113150 - 41113020
Alignment:
Q  78 tagcggagtcagaaattttgaatagtaggaggcaccattgcacgaaatttgttaggaaggagagtttgtgtggttgattttacggttccgtgaaataagg 177  Q
    |||||||||||||||||||||||| | || ||||  ||| ||||||||||||| ||| | | ||||  ||||||||||||||||||||| ||||||||||    
T  41113150 tagcggagtcagaaattttgaataatggg-ggcattattacacgaaatttgttgggaggaaaagttgatgtggttgattttacggttccatgaaataagg 41113052  T
Q  178 aggaatggtttttatttttctcattgaaaaag 209  Q
    |||||   |||| |||||||||||||| ||||    
T  41113051 aggaagaattttcatttttctcattgagaaag 41113020  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 3049180 - 3049311
Alignment:
Q  77 gtagcggagtcagaaattttgaatagtaggaggcaccattgcacgaaatttgttaggaaggagagtttgtgtggttgattttacggttccgtgaaataag 176  Q
    |||| |||| ||| ||||||||||||| |||||||||||| ||||||||||||||||| | | ||| || ||| ||||||||| |||| | ||||| |||    
T  3049180 gtaggggagccagtaattttgaatagt-ggaggcaccattacacgaaatttgttaggaggaaaagtatgcgtgtttgattttatggttgcatgaaacaag 3049278  T
Q  177 gaggaatggtttttatttttctcattgaaaaag 209  Q
    ||||||  ||||| |||||||||||||| ||||    
T  3049279 gaggaagagttttcatttttctcattgagaaag 3049311  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 33702076 - 33702206
Alignment:
Q  74 gcagtagcggagtcagaaattttgaatagtaggaggcaccattgcacgaaatttgttaggaaggagagtttgtgtggttgattttacggttccgtgaaat 173  Q
    |||||||||||||||||||||||||| ||| |||||||| |||  |||||||||||| ||| |||||||| |||||||  ||||||     || |||||     
T  33702076 gcagtagcggagtcagaaattttgaacagt-ggaggcactattatacgaaatttgttgggagggagagttggtgtggtcaatttta----gccatgaaac 33702170  T
Q  174 aaggaggaatggtttttatttttctcattgaaaaag 209  Q
    |||||||||  ||||| |||||||||||||| ||||    
T  33702171 aaggaggaagagttttcatttttctcattgagaaag 33702206  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 17165162 - 17165041
Alignment:
Q  76 agtagcggagtcagaaattttgaatagtaggaggcaccattgcacgaaatttgttaggaaggagagtttgtgtggttgattttacggttccgtgaaataa 175  Q
    |||||||||| ||  ||||||||||||| |||   |||||| |||| |||||||| ||| |||||||| |||||||||||| ||||||||| | ||  ||    
T  17165162 agtagcggagccatgaattttgaatagtgggaaa-accattacacggaatttgttgggagggagagttggtgtggttgattgtacggttccataaaccaa 17165064  T
Q  176 ggaggaatggtttttatttttct 198  Q
    ||||||| |||||| ||||||||    
T  17165063 ggaggaaaggttttcatttttct 17165041  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 99023 - 99080
Alignment:
Q  144 tgtgtggttgattttacggttccgtgaaataaggaggaatggtttttatttttctcatt 202  Q
    ||||||||||||||| || |||| ||||||||||||||| |||||| ||||||||||||    
T  99023 tgtgtggttgatttt-cgattccatgaaataaggaggaaaggttttcatttttctcatt 99080  T

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