View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_142 (Length: 236)
Name: NF18178_high_142
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_142 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 50774648 - 50774769
Alignment:
| Q |
100 |
ctcatcatcatagtataaaattaaataattttgaaaaccaactcaattattgtacaaaactaaaatcattttttaatcaattttgatcatattctccatt |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50774648 |
ctcatcatcatagtataaaactaaataattttgaaaaccaactcaattattgtacaaaactaaaatcactttttaatcaattttgatcatattctccatt |
50774747 |
T |
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| Q |
200 |
tgagtgctgaaactatcatttg |
221 |
Q |
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||||||||||||| |||||||| |
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| T |
50774748 |
tgagtgctgaaaccatcatttg |
50774769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50774484 - 50774586
Alignment:
| Q |
1 |
tttgtttatcaaaacaaacatagttaatatataaattattctacgttaaactatgttacatgtcaatcagactcatcatcaacgtcctcgtgagcttagc |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50774484 |
tttgtttatcaaaacaaacatagttaatgtataaattattctacgttaaactatgttacatgtcaatcagactcatcatcatcgtcctcgtgagcttagc |
50774583 |
T |
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| Q |
101 |
tca |
103 |
Q |
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||| |
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| T |
50774584 |
tca |
50774586 |
T |
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