View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_152 (Length: 227)
Name: NF18178_high_152
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_152 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7764699 - 7764925
Alignment:
| Q |
1 |
taaaagaataaacacagtcctatgataatggagtgtatgctacatgaattaatgttaatcccagtatgccatgtattcggggcgtgaatcacgccataga |
100 |
Q |
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| T |
7764699 |
taaaagaataaacacagtcttatgataattgagtatatgctacatgaattaatgttaatcccagtatgccatgtatttggggcgtgaatcacgccataga |
7764798 |
T |
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| Q |
101 |
cggagtggccaccccaaagaaagactagtcatttcggcagatattacacacggaacaccgtagacttcgagcatggtatattgctagtctttgtcctaaa |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7764799 |
cggagtggccaccccaaagaaagacaagtcatttcggcaaatattacacacggaacaccgtagacttcgagcatggtatattgctagtctttgtcctaaa |
7764898 |
T |
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| Q |
201 |
gtttcataccggaacagaaataaaatt |
227 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
7764899 |
gtttcataccggaacataaataaaatt |
7764925 |
T |
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