View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_high_22 (Length: 536)
Name: NF18178_high_22
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 255 - 522
Target Start/End: Original strand, 41125385 - 41125654
Alignment:
| Q |
255 |
aacaaacaaatactatctatatctattcttctttggtttgtgtgatttgaaagcttgaaaggaaactaaatgaagaagtgaccgtgtgtgttagcctaca |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
41125385 |
aacaaacaaatactatctatatctattcttctttgatttgtgtgatttgaaagcttgaaaggaaactaaatgaagaagtgactgtatgtgttagcctaca |
41125484 |
T |
|
| Q |
355 |
atcgaaaactgaaacttaagttagagccaagtttgaaaccttgattgtgttgttccgataacatattatgactcttctatacaaaagtttgtctttgcat |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
41125485 |
atcgaaaactgaaacttaagttagagccaagtttgaaaccttgattgtgttgttccgataacatattctgactcttctatacaaaagttcgtctttgcat |
41125584 |
T |
|
| Q |
455 |
atggaaaaagaaagaaacaggttatgcggtggg--nnnnnnngttgggatacaaatgtggtggttctatt |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41125585 |
atggaaaaagaaagaaacaggttatgcggtgggttttattttgttgggatacaaatgtggtggttctatt |
41125654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 59 - 257
Target Start/End: Original strand, 41125127 - 41125325
Alignment:
| Q |
59 |
gttatcatgttgtcgcaaacctcagcaatgtgacgctccttcttatatagttcgaattacgcaccgctcttttctgcttccacagtgaaatttctgtgac |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41125127 |
gttatcatgttgtcgcaaacctcagcaatgtgacgctccttcttatatagtttgaattacgcaccgctcttttctgcttccacagtgaaatttctgtgac |
41125226 |
T |
|
| Q |
159 |
tgcaatgcagatctcagcatttccccaggaggttccctcctttccnnnnnnnnggcagttaattctttagtttgtgtttgattgagagcattatttaac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41125227 |
tgcaatgcagatctcagcatttccccaggaggttccctcctttccttttttttggtagttaattctttagtttgtgtttgattgagagcattatttaac |
41125325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 41122970 - 41123012
Alignment:
| Q |
11 |
caaaggagaggaagagatttagagagagggagaaaaataagac |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41122970 |
caaaggagaggaagagatttagagagagggagaaaaataagac |
41123012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 255 - 486
Target Start/End: Original strand, 39443488 - 39443719
Alignment:
| Q |
255 |
aacaaacaaatactatctatatctattcttctttggtttgtgtgatttgaaagcttgaaaggaaactaaatgaagaagtgaccgtgtgtgttagcctaca |
354 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39443488 |
aacaaacacatactatctatatctattctcctttggtttgtgtgatttgaaagcttgaaaggaaactaaatgaagaagtgaccgtgtgcgttagcctaca |
39443587 |
T |
|
| Q |
355 |
atcgaaaactgaaacttaagttagagccaagtttgaaaccttgattgtgttgttccgataacatattatgactcttctatacaaaagtttgtctttgcat |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
39443588 |
atcgaaaactgaaacttaagttagagccaagtttaaaaccttgattgtgttgttccgataacatattctgactcttctatacaaaaatttgtctttgcat |
39443687 |
T |
|
| Q |
455 |
atggaaaaagaaagaaacaggttatgcggtgg |
486 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
39443688 |
atggaaaaagaaagaaacaggttatgtggtgg |
39443719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 39443176 - 39443426
Alignment:
| Q |
11 |
caaaggagaggaagagatttagagagagggagaaaaataagacagggggttatcatgttgtcgcaaacctcagcaatgtgacgctccttcttatatagtt |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
39443176 |
caaaggagaggaggagatttagagagagggagaaaaataagacagggggttatcatgttgtcgcaaaccttagcagtgtgacgctccttcttatatagtt |
39443275 |
T |
|
| Q |
111 |
cgaattacgcaccgctcttttctgcttccacagtgaaatttc---tgtgactgcaatgcagatctcagcatttccccaggaggttccctcctttcc---- |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39443276 |
tgaattacgcaccgctcttttctgcttccacagcgaaatttcttttgtgactacaatgcagatctcagcatttccccaggaggttccctcctttcctttt |
39443375 |
T |
|
| Q |
204 |
nnnnnnnnggcagttaattctttagtttgtgtttgattgagagcattattt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39443376 |
ttttttttggcagttaattctttagtttgtgtttgattgagagcattattt |
39443426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 48822170 - 48822131
Alignment:
| Q |
283 |
ttctttggtttgtgtgatttgaaagcttgaaaggaaacta |
322 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
48822170 |
ttctttggtttgtgtgatttgaaagtttgaaagggaacta |
48822131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University