View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_28 (Length: 489)
Name: NF18178_high_28
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Original strand, 6731802 - 6732263
Alignment:
| Q |
17 |
attgtattgaaatgaactaaaattgtttggataatttttatgattgaattccaaataccttggatttgtggatcccaagaaaggttcatttgaagagtgg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6731802 |
attgtattgaaatgaactaaaattgtttggataatttttatgattgaattccaaataccttggatttgtggatcccaagaaaggttcatttgaagagtgg |
6731901 |
T |
|
| Q |
117 |
gtttaacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccggtaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6731902 |
gtttaacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccagtaaa |
6732001 |
T |
|
| Q |
217 |
ttcaggaacttgaggagcaccacaccaaaaccttatttgattcccatgaatcttttccgcaagaaccaacagcttcatcaaatcccttttattctcaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6732002 |
ttcaggaacttgaggagcaccacaccaaaaccttatttgattcccatgaatcttttccgcaagaaccaacagcttcatcaaatcccttttattctcaaat |
6732101 |
T |
|
| Q |
317 |
ggaacaacaacagacgaatgccagtgaagagcatcaagtttcttctgaagcttttcttgttgagctggacaagacaaacagttcttgaaagtaggcttct |
416 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6732102 |
ggaacaacaacagacgaatgccagtcaagagcatcaagtttcttctgaagcttttcttgttgagctggacaagacaaacaattcttgaaagtaggcttct |
6732201 |
T |
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| Q |
417 |
tgctttttcttacaagatctgtgagctctcctgtgatagactctactatttctgtatcttca |
478 |
Q |
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| T |
6732202 |
tgctttttcttacaagatctgtgagctctcctgtgatagtctctactatttctgtatcttca |
6732263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 314
Target Start/End: Original strand, 6740511 - 6740716
Alignment:
| Q |
109 |
aagagtgggtttaacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagcctt |
208 |
Q |
| |
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|||||||| |||| |||| |||||||||||||||||| || ||||||| |||||| ||| | ||| |||| |||||||||| | || | | || | || |
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| T |
6740511 |
aagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaagcaccatccttcatcaattcaaccttcaactcattaaattgcttaaccatt |
6740610 |
T |
|
| Q |
209 |
ccggtaaattcaggaacttgaggagcaccacaccaaaaccttatttgattcccatgaatcttttccgcaagaaccaacagcttcatcaaatcccttttat |
308 |
Q |
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| T |
6740611 |
ccaataaattcaggctcctgaggagcaccacacagacccctaatttgattcacatgattatctttcacatgagtcaacacctccatcaaatcccttttat |
6740710 |
T |
|
| Q |
309 |
tctcaa |
314 |
Q |
| |
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|||||| |
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| T |
6740711 |
tctcaa |
6740716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 7095787 - 7095671
Alignment:
| Q |
72 |
taccttggatttgtggatcccaagaaaggttcatttgaagagtgggtttaacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgag |
171 |
Q |
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|||||| ||||||||| |||||| | || ||| | |||||||| |||| |||| |||||||||||||||||| || |||||||||||||| || | |
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| T |
7095787 |
tacctttgatttgtggttcccaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaaacaccatctttcat |
7095688 |
T |
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| Q |
172 |
caactcaatcttcaact |
188 |
Q |
| |
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||| ||||||||||||| |
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| T |
7095687 |
caattcaatcttcaact |
7095671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 6749593 - 6749652
Alignment:
| Q |
129 |
cacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaact |
188 |
Q |
| |
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|||||||||||||||||| || ||||||||||||| ||| | ||||||||||||||||| |
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| T |
6749593 |
cacccaaaccagtcaaaaaaagtacagaaacaccatccttcatcaactcaatcttcaact |
6749652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 6725410 - 6725491
Alignment:
| Q |
109 |
aagagtgggtttaacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgagcaactcaatcttcaactca |
190 |
Q |
| |
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|||||||| |||| |||| |||||||||||||||||| || ||||||| |||||| ||| | ||| |||| |||||||||| |
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| T |
6725410 |
aagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaagcaccatccttcatcaattcaaccttcaactca |
6725491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 6724617 - 6724665
Alignment:
| Q |
24 |
tgaaatgaactaaaattgtttggataatttttatgattgaattccaaat |
72 |
Q |
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||||||||| ||||||||| |||||| ||||||||||||||| |||||| |
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| T |
6724617 |
tgaaatgaaataaaattgtatggatattttttatgattgaatgccaaat |
6724665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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