View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_30 (Length: 476)
Name: NF18178_high_30
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 103 - 465
Target Start/End: Complemental strand, 49102262 - 49101905
Alignment:
| Q |
103 |
gaatttgaaccaattacccttcaaaatttgttaattagtagtattgtattgtattgtatnnnnnnnnnntgaaagacttttgccatttgacaagaagttt |
202 |
Q |
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| T |
49102262 |
gaatttgaaccaattacccttcaaaatttgttaattagtagtattgtattgtataaaa------aaaaatgaaagacttttgccatttgacaagaagttt |
49102169 |
T |
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| Q |
203 |
ttcagcatagggagactatattgagatttgagaccctctaaagatcatagtatagtataggattgtcaattattttccaatagaatgggcgtgaacaaca |
302 |
Q |
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| T |
49102168 |
ttcagcatagggagactatattgagatttgagaccctctaaagatcatagtatagtataggattgtcaattattttccaatagaatgggcgtgaacaaca |
49102069 |
T |
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| Q |
303 |
tagtattgacttgctgcacaaaagatatgattatggttagcatgtaggataaaagttttggggggaaaaaggatatctt-ttttgctttgttggccattg |
401 |
Q |
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| T |
49102068 |
tagtattgacttgctgcacaaaagatatgattatggttagcatgtaggataaaagtttttgggggaaaaaggatatctttttttgctttgttggccattg |
49101969 |
T |
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| Q |
402 |
ttgctttaaagagataaagaatggacactgaataagattgagtggatattcttatgattaatat |
465 |
Q |
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| T |
49101968 |
ttgctttaaagagataaagaatggacactgaataagattgagtggatattctgatgattaatat |
49101905 |
T |
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