View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_high_42 (Length: 455)

Name: NF18178_high_42
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_high_42
NF18178_high_42
[»] chr8 (5 HSPs)
chr8 (1-441)||(5055863-5056303)
chr8 (300-393)||(5179645-5179737)
chr8 (19-67)||(11319494-11319542)
chr8 (6-50)||(2447381-2447425)
chr8 (24-68)||(27318599-27318643)
[»] chr2 (3 HSPs)
chr2 (23-69)||(29363198-29363244)
chr2 (29-67)||(44608205-44608243)
chr2 (22-66)||(34655205-34655249)
[»] chr1 (5 HSPs)
chr1 (5-65)||(33717198-33717260)
chr1 (22-72)||(6263020-6263070)
chr1 (23-73)||(1498034-1498084)
chr1 (19-48)||(28026909-28026938)
chr1 (23-67)||(29820448-29820492)
[»] chr5 (2 HSPs)
chr5 (19-64)||(10839199-10839244)
chr5 (19-68)||(12929740-12929791)
[»] chr4 (2 HSPs)
chr4 (17-68)||(48485943-48485993)
chr4 (23-67)||(31550714-31550758)
[»] chr3 (1 HSPs)
chr3 (273-325)||(53698791-53698843)


Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 5055863 - 5056303
Alignment:
Q  1 aatattgtgtgttctctctgtgtttttcgtatctttttacttttgaaccagggttgttgttctaacaatatttgtatggtaaactcttgtgagaatcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5055863 aatattgtgtgttctctctgtgtttttcgtatctttttacttttgaaccagggttgttgttctaacaatatttgtatggtaaactcttgtgagaatcaac 5055962  T
Q  101 caggacttttttgacataattcaaacaatgacacttggtaataagaactacttaacttttatcatttggtaattctacttgcactttataaccattttag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5055963 caggacttttttgacataattcaaacaatgacacttggtaataagaactacttaacttttatcatttggtgattctacttgcactttataaccattttag 5056062  T
Q  201 ttatgatgtttgtactgtgttgcagcttggttgtggtcaaagcatcaagttttacagctccaatgcatcctctattctatctgagaagactcaagcctat 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5056063 ttatgatgtttatactgtgttgcagcttggttgtggtcaaagcatcaagttttacagctccaatgcatcttctattctatctgagaagactcaagcctat 5056162  T
Q  301 aattctagaaagattaactcaaccaagttgacggcgagtcatgacttagagcacatgacaccagcaaaacaagttacaaagattcagcaagattatttca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5056163 aattctagaaagattaactcaaccaagttgacggcgagtcatgacttagagcacatgacaccagcaaaacaagttacaaagattcagcaagattatttca 5056262  T
Q  401 tcaataatagtaagaattctttgaaaacagttgatggtgaa 441  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  5056263 tcaataatagtaagaattctttgaaaacacttgatggtgaa 5056303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 5179737 - 5179645
Alignment:
Q  300 taattctagaaagattaactcaaccaagttgacggcgagtcatgacttagagcacatgacaccagcaaaacaagttacaaagattcagcaagat 393  Q
    |||||| |||||||||||||  ||||||||||||   |||||||||||| |  |||||| || ||||||||||||||| || | ||||||||||    
T  5179737 taattccagaaagattaacttcaccaagttgacgta-agtcatgacttataagacatgaaacaagcaaaacaagttaccaaaactcagcaagat 5179645  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 11319494 - 11319542
Alignment:
Q  19 tgtgtttttcgtatctttttacttttgaaccagggttgttgttctaaca 67  Q
    |||||||||||||||| ||||||||||||| ||||||| | ||||||||    
T  11319494 tgtgtttttcgtatctgtttacttttgaactagggttgctattctaaca 11319542  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 2447381 - 2447425
Alignment:
Q  6 tgtgtgttctctctgtgtttttcgtatctttttacttttgaacca 50  Q
    ||||| |||| | ||||||||||||||||||||||||||| ||||    
T  2447381 tgtgttttctgtttgtgtttttcgtatctttttacttttgcacca 2447425  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 27318599 - 27318643
Alignment:
Q  24 ttttcgtatctttttacttttgaaccagggttgttgttctaacaa 68  Q
    |||| |||||||||||||||||||||| |||||  ||||||||||    
T  27318599 tttttgtatctttttacttttgaaccaaggttgcggttctaacaa 27318643  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 29363198 - 29363244
Alignment:
Q  23 tttttcgtatctttttacttttgaaccagggttgttgttctaacaat 69  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||    
T  29363198 tttttcgtatccgtttacttttgaaccagggttgttgttctaacaat 29363244  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 44608243 - 44608205
Alignment:
Q  29 gtatctttttacttttgaaccagggttgttgttctaaca 67  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  44608243 gtatctttttacttttgaaccagggctgttgttctaaca 44608205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 34655249 - 34655205
Alignment:
Q  22 gtttttcgtatctttttacttttgaaccagggttgttgttctaac 66  Q
    ||||||||||||| |||||||||||| || |||| ||||||||||    
T  34655249 gtttttcgtatctgtttacttttgaatcaaggttcttgttctaac 34655205  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 33717260 - 33717198
Alignment:
Q  5 ttgtgtgttctctctgtg--tttttcgtatctttttacttttgaaccagggttgttgttctaa 65  Q
    ||||||||||||| | ||  |||||||||||| ||||||||||||| ||||||||||||||||    
T  33717260 ttgtgtgttctctgtttgcatttttcgtatctgtttacttttgaactagggttgttgttctaa 33717198  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 6263020 - 6263070
Alignment:
Q  22 gtttttcgtatctttttacttttgaaccagggttgttgttctaacaatatt 72  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||| ||||    
T  6263020 gtttttcgtatctattttcttttgaaccaggattgttgttctaacagtatt 6263070  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 1498034 - 1498084
Alignment:
Q  23 tttttcgtatctttttacttttgaaccagggttgttgttctaacaatattt 73  Q
    |||||||||||| ||| ||||||||||||||||  ||||||||||| ||||    
T  1498034 tttttcgtatctgttttcttttgaaccagggttactgttctaacaaaattt 1498084  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 28026938 - 28026909
Alignment:
Q  19 tgtgtttttcgtatctttttacttttgaac 48  Q
    ||||||||||||||||||||||||||||||    
T  28026938 tgtgtttttcgtatctttttacttttgaac 28026909  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 29820492 - 29820448
Alignment:
Q  23 tttttcgtatctttttacttttgaaccagggttgttgttctaaca 67  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||||||    
T  29820492 ttttttgtatctgttttcttttaaaccagggttgttgttctaaca 29820448  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 10839199 - 10839244
Alignment:
Q  19 tgtgtttttcgtatctttttacttttgaaccagggttgttgttcta 64  Q
    |||||||||||||||| ||| || ||||||||||||||||||||||    
T  10839199 tgtgtttttcgtatctgttttctcttgaaccagggttgttgttcta 10839244  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 12929740 - 12929791
Alignment:
Q  19 tgtgtttttcgtatctttt--tacttttgaaccagggttgttgttctaacaa 68  Q
    |||||||| ||||||||||  || |||||||||||||||| |||||||||||    
T  12929740 tgtgttttacgtatcttttattaattttgaaccagggttgctgttctaacaa 12929791  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 48485993 - 48485943
Alignment:
Q  17 tctgtgtttttcgtatctttttacttttgaaccagggttgttgttctaacaa 68  Q
    |||||||||||| ||| |||||||||||||||| ||||| ||||||||||||    
T  48485993 tctgtgtttttcatatgtttttacttttgaacc-gggttcttgttctaacaa 48485943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 31550758 - 31550714
Alignment:
Q  23 tttttcgtatctttttacttttgaaccagggttgttgttctaaca 67  Q
    |||||||||| | ||||||||||||||||||||  ||||||||||    
T  31550758 tttttcgtatatatttacttttgaaccagggtttctgttctaaca 31550714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 53698843 - 53698791
Alignment:
Q  273 tattctatctgagaagactcaagcctataattctagaaagattaactcaacca 325  Q
    |||||| ||| |||||||||||| ||||||||| |||||||| |||| |||||    
T  53698843 tattctgtctaagaagactcaagtctataattccagaaagatcaacttaacca 53698791  T

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