View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_47 (Length: 432)
Name: NF18178_high_47
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_47 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 419
Target Start/End: Complemental strand, 39593079 - 39592661
Alignment:
| Q |
7 |
tcgaagaatataaaaatagttgtttcatatttatttatggaaattcctaatatggaatgaaagaaaaccaattataaatatgacaaaagattaagaagtt |
106 |
Q |
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| T |
39593079 |
tcgaacaatataaaaatagttgtttcatatttatttatggaaattcctaatatggaatgaaagaaaaccaattataaatatgacaaaagattaagaagtt |
39592980 |
T |
|
| Q |
107 |
gcccaaaatattaggagagtatgtcttaatcttatcacatgacttaaggaaaaagtatccatccgtcacctttgttttgggtcaaatatagagattccag |
206 |
Q |
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| T |
39592979 |
gcccaaaatattaggagagtatgtcttaatcttatcacatcacttaaggaaaaagtatccatccgtcacctttgttttgggtcaaatatagagattccag |
39592880 |
T |
|
| Q |
207 |
taattaaacggcttgatgaaagatccac------gatatatcaccaacttcaaggggtttagaccaaaatacactctcaacaaatcaaaccaattaatgc |
300 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39592879 |
taattaaacggcttgatgaaagacccacagtacaaatatatcaccaacttcaaggggtttagaccaaaatacactctcaacaaatcaaaccaattaatgc |
39592780 |
T |
|
| Q |
301 |
acaagagaagttctgggaactattaaagctataccaaatccagcagtaaggaaccactaaaagacagctaaaataaaataggatgatgacagcaacctat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39592779 |
acaagagaagttctgggaactattaaagctataccaaacccagcagtaaagaaccactaaaagacagctaaaataaaataggatgatgacagcaacctat |
39592680 |
T |
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| Q |
401 |
agctaatgaccattatagg |
419 |
Q |
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|||||| |||||||||||| |
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| T |
39592679 |
agctaaagaccattatagg |
39592661 |
T |
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