View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_49 (Length: 428)
Name: NF18178_high_49
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 54080954 - 54080620
Alignment:
| Q |
11 |
tttagagggtatgcagtgtatttgttgttgatactctgaagaggttttgaagtat--ttatagctgctgaatgctcttgttttggtgtgaacatgtggaa |
108 |
Q |
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| T |
54080954 |
tttagagggtatgcagtgtatttgttgttgatactctgaagaggttttgaagtatatttatagccgctgaatgctctagttttggtgtgaacatgtggaa |
54080855 |
T |
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| Q |
109 |
tgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttgtggttgaagccccttgaac |
208 |
Q |
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| T |
54080854 |
tgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttgtggttgaagccccttgaac |
54080755 |
T |
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| Q |
209 |
atgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttattattgac |
308 |
Q |
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| T |
54080754 |
atgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttattattgac |
54080655 |
T |
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| Q |
309 |
tatatgcatgataatatgacatggtgtttttgctc |
343 |
Q |
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| T |
54080654 |
tatatgcatgataatatgacatggtgtttttgctc |
54080620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 90 - 311
Target Start/End: Complemental strand, 54084228 - 54084009
Alignment:
| Q |
90 |
ttggtgtgaacatgtggaatgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttg |
189 |
Q |
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| T |
54084228 |
ttggtgtgaaaatgcggaatgattattttaagtttgaggctagaaagtagaggagatcatattggcgtggcatatttgaatttggatggataaaaacttg |
54084129 |
T |
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| Q |
190 |
tggttgaagccccttgaacatgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatga |
289 |
Q |
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| T |
54084128 |
tggttgaaacgccttgaacttgctcattggcatgatttatggcatgtgccaataca--atgccgactcatacgatggccactctacttagtggaggatga |
54084031 |
T |
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| Q |
290 |
aaggctgtttattattgactat |
311 |
Q |
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| T |
54084030 |
aaggttgtttattgttgactat |
54084009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 54080584 - 54080549
Alignment:
| Q |
376 |
ctgatcctttgcgtgaacagctcatctcatggttat |
411 |
Q |
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| T |
54080584 |
ctgatcctttgcgtggacagctcatctcatggttat |
54080549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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