View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_5 (Length: 796)
Name: NF18178_high_5
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Original strand, 54848028 - 54848702
Alignment:
| Q |
1 |
tgagttcacttggaacaagtttctcacaaaagtaagagcatttaattgtttgtttaa------------ttaattttgcttgattaaattttgtgttata |
88 |
Q |
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| T |
54848028 |
tgagttcacttggaacaagtttctcacaaaagtaagagcatttaattgtttgtttaattaattaattaattaattttgcttgattaaattttgtgttata |
54848127 |
T |
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| Q |
89 |
tgtatgagcaggagaggaggattatcaaggtattactcagggaaagcaagatcatttgtttgtatggaagatgtacattcggttgaggatttgaagaaac |
188 |
Q |
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| T |
54848128 |
tgtatgagcaggagaggaggattatcaaggtattactcagggaaagcaagatcatttgtttgtatggaagatgtacattcggttgaggatttgaagaaac |
54848227 |
T |
|
| Q |
189 |
caaaacatcctgatgcaaagaaaagaaagaaacattctcatagaaaggaattcatcaaccttaatccatatcattgtcgaagggcgccaagttgcactca |
288 |
Q |
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| T |
54848228 |
caaaacatcctgatgcaaagaaaagaaagaaacattctcataggaaggaattcatcaaccttaatccatatcattgtcgaagggcgccaagttgcactca |
54848327 |
T |
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| Q |
289 |
attaactacctcatacgtcaatgcttaaaattatttggatgttcacaagaatcagtacatgtttggattgaccttgattgacaaat-------------- |
374 |
Q |
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| T |
54848328 |
attaactacctcatacgtcaatgcttaaaattatttggatgttcacaagaatcagtacatgtttggattgaccttgattgacaaatttagcgtgacactg |
54848427 |
T |
|
| Q |
375 |
-----ttattcaagctctaaaacgtagtttttgtcaaaattattatgttcaccataattctgacaatctcagtgtcattccaaacacgtgtttagaatca |
469 |
Q |
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| T |
54848428 |
ttatcttattcaagctctaaaacgtagtttttgtcaaaattattatgttcaccataattctgacaatctcagtgtcattccaaacacgtgtttagaatca |
54848527 |
T |
|
| Q |
470 |
ttcattactctgctttcttcctcatgttgtatgtataagttaattattgtttaatatttctagcacttccgcattcatgcggtttatatacattgtacag |
569 |
Q |
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| T |
54848528 |
ttcattactctgctttcttcctcatgttgtatatataagttaattattgtttaatatttctagcacttccgcattcatgcggtttatatacattgtacag |
54848627 |
T |
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| Q |
570 |
tttcaatatagaaaaatgaaatcaannnnnnnaaatttatccttctcaacaatataatcttcgccaatgtgatgc |
644 |
Q |
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| T |
54848628 |
tttcaatatagaaaaatgaaatcaatttttttaaatttatccttctcaacaatataatcttcgccaatgtgatgc |
54848702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 704 - 760
Target Start/End: Original strand, 54848675 - 54848731
Alignment:
| Q |
704 |
aacactataatcttcaccaatgtgatgctatcttgattcaataattgtaagatttct |
760 |
Q |
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|||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54848675 |
aacaatataatcttcgccaatgtgatgctatctcgattcaataattgtaagatttct |
54848731 |
T |
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