View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_57 (Length: 408)
Name: NF18178_high_57
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 94 - 390
Target Start/End: Complemental strand, 16699574 - 16699289
Alignment:
| Q |
94 |
gtcaacgaaattatgaagaaagttatgcaaattaacaaatatgattgtttagaattaatgagtttaattttattccttttttacaaataacattttagct |
193 |
Q |
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| T |
16699574 |
gtcaatgaaattatgaagaaagttatgcaaattaacaaatatgattgtttagaattaatgagtttaattttattcctttcttacaaataacattttagct |
16699475 |
T |
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| Q |
194 |
gagtttgatttgtgttcataagagtaagagaaagccaaatgcttaaatattgatccacataatatgaattgaattcttatcaacaaatcaattagtg-aa |
292 |
Q |
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| T |
16699474 |
gagtttgatttgtgttcataagagtaagag------------ttaaatattgatccacataatatgaattgaattcttatcaactaatcaattagtggaa |
16699387 |
T |
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| Q |
293 |
aaattggaactgaagctcctttgtcttcttacaaacactcaacaaaatcatcaaactcgtcgatagcacttccggtaacttaactaatgccctcttac |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16699386 |
aaattggaactgaagctcctttgtcttcttacaaacactcaacaaaatcatcaaactcgtcgatagcacttccggtaacttaactaatgccctcttac |
16699289 |
T |
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