View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_62 (Length: 392)
Name: NF18178_high_62
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_62 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 50 - 362
Target Start/End: Original strand, 32702459 - 32702763
Alignment:
| Q |
50 |
caacacacttcgtagctaatttactggctaggcaaataattcaaattgactatcaacaagaagatctttaaaacaaatataaaatcaaacaaatatgtca |
149 |
Q |
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| T |
32702459 |
caacacacttcgtagctaatttactggctaggcaaataattcaaattaactatcaacaagaagatctttaaaacaaatataaaatcaaacaaatatgtaa |
32702558 |
T |
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| Q |
150 |
tcatggctttctagtcaatactatggtaatatttatgaccttagttttctctttgggcagggcagcatgtgatcggttgcatttttgttaaagcggttaa |
249 |
Q |
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| T |
32702559 |
tcatggctttctagt------tatggtaatatttatgaccttagttttctctttgggc-----agcatgtgatcggttgcatttttgttaaagcggttaa |
32702647 |
T |
|
| Q |
250 |
aaacctcctcagtgacaccttcaccaaaatgactaac---aaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccattatcaagttc |
346 |
Q |
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| T |
32702648 |
aaacctcctcagtgacaccttcaccaaaatgactaaccaacaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccattatcaagttc |
32702747 |
T |
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| Q |
347 |
attcaaatttacttca |
362 |
Q |
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|||||||||||||||| |
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| T |
32702748 |
attcaaatttacttca |
32702763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 32626882 - 32626954
Alignment:
| Q |
264 |
acaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccat |
336 |
Q |
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| T |
32626882 |
acaccttcaccaaaatgactgactagcaaaggttcagccaaagctctcatgcattgtgccacattgtatccat |
32626954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 232 - 336
Target Start/End: Original strand, 5810555 - 5810659
Alignment:
| Q |
232 |
ttttgttaaagcggttaaaaacctcctcagtgacaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacatcgta |
331 |
Q |
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|||| ||| |||| ||||||| ||| | | |||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5810555 |
ttttcttatagcgattaaaaatctctttaatgacaccttcaccaaagtgactagctagcaaaggttcagccacagcccttatgcattgtgccacattgta |
5810654 |
T |
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| Q |
332 |
tccat |
336 |
Q |
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||||| |
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| T |
5810655 |
tccat |
5810659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 27735885 - 27735959
Alignment:
| Q |
262 |
tgacaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccat |
336 |
Q |
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| T |
27735885 |
tgacaccttcaccaaagtgactaactagcaaaggttcagccacagccctaatgcattgtgccatattgtatccat |
27735959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 21941694 - 21941752
Alignment:
| Q |
241 |
agcggttaaaaacctcctcagtgacaccttcaccaaaatgactaacaaacaaaggttca |
299 |
Q |
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| T |
21941694 |
agcggttaaatacctcttcagtcacaccttcaccaaaatgactaataagcaaaggttca |
21941752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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