View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_73 (Length: 360)
Name: NF18178_high_73
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 4793274 - 4793074
Alignment:
| Q |
11 |
caaaggaaatgatagaaattaaaggaagtgaaaatgttaaagagcgattggattttgcattcatttaaagtaataannnnnnncttaattaaatcgcagg |
110 |
Q |
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| T |
4793274 |
caaaggaaatgatag-----aaaggaagtgaaaatgttaaagagcgattggattttgcattcaattaaagtaataatttttttcttaattaaatcgcagg |
4793180 |
T |
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| Q |
111 |
ttttctctattcaccggtgccgatctcggcaatgccgcccgtggttgcattcacatttgttttcatgtattattacatgcttcctatggtatatagttgg |
210 |
Q |
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| T |
4793179 |
ttttctctattcaccggtgccgatctcggcaatgccgcccgtggttgcattcacattagttttcatg---tattacatgcttcctatggtatatagttgg |
4793083 |
T |
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| Q |
211 |
accacgagg |
219 |
Q |
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||||||||| |
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| T |
4793082 |
accacgagg |
4793074 |
T |
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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 4793023 - 4792931
Alignment:
| Q |
217 |
aggaggggcgttgatctttggctatttctacatagcactcatgttgactgcaattcatttcccagtgaaattcaaacactaggaaattatttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
4793023 |
aggaggggcgttgatctttggctatttctacatagcactcatgttgactgcaattcatttcctagtgaaattcaaacactaggaaatgatttg |
4792931 |
T |
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