View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_high_74 (Length: 358)
Name: NF18178_high_74
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_74 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 22586084 - 22586416
Alignment:
| Q |
19 |
gaaatgaacctattaaaagcttggtcttttgaagattcatgacttaaattggctacttcagatactctctcatgtggcaacataagaagaggagtctcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22586084 |
gaaatgaacctattaaaagcttggtcttttgaagaatcatgacttaaattggctacttcagatactctctcatgtggcaacataagaagaggagactcat |
22586183 |
T |
|
| Q |
119 |
caactaaaagctctcttaaaagttcatcattctctgaccaattagaagacattattttctccatcattgtctttgacatggatgagtcaatcatatttat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22586184 |
caactaaaagctctcttaaaagttcatcattctctgaccaattagaagacattattttctccatcattgtctttgacatggatgagtcaatcatatttat |
22586283 |
T |
|
| Q |
219 |
tatgctttaaagagaaaatagtataattgaaatatgaatttaggtgaagtaaagatataataggctaatgagatatgaaagagtggagtagatatatgaa |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22586284 |
taggctttaaagagaaaatagtataattgaaatatgaatttaggtgaagtaaagatataataggctaatgagatatgaaagagtggagtagatatatgaa |
22586383 |
T |
|
| Q |
319 |
gaggtggttgttatgcaatac-ttgtttcttct |
350 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
22586384 |
gaggtggttgttatgcaatactttgtttcttct |
22586416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University