View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_76 (Length: 353)
Name: NF18178_high_76
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_76 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 38 - 251
Target Start/End: Complemental strand, 42157376 - 42157170
Alignment:
| Q |
38 |
caaaagaaataaaagttgttagtgaactgattgggggaccatttctgatatatagtttttcttctttagactttagagtagcttaattttaaataagata |
137 |
Q |
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| T |
42157376 |
caaaagaaataaaagttgttagtgaactgattgggggaccatttctgatatatagtttttcttctttaga-------gtagcttaattttaaataagata |
42157284 |
T |
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| Q |
138 |
ccttaataattataatggataggtcattgcacgaaaagtccaggagttggaaagtgactaataggggaggctatctaggcatacaactatacaagctaat |
237 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42157283 |
ccttaataattataatggataggtcattgcaccaaaagtccaggagttggaaagtgactaataggggaggctatctaggcatacaactatacaagccaat |
42157184 |
T |
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| Q |
238 |
ttgtttttcaataa |
251 |
Q |
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|||||||||||||| |
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| T |
42157183 |
ttgtttttcaataa |
42157170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 248 - 353
Target Start/End: Complemental strand, 42156822 - 42156717
Alignment:
| Q |
248 |
ataattagacaggccaaccctattcctatagaaattttcccttgacaagctaaaccctccctatgctggttttactttagccaataaataaattctaaaa |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
42156822 |
ataattagacaggccaaccctattcctatagaaattttcccttgacaagctaaaccctccctatgttggttttactttagcaaataaataaattctaaat |
42156723 |
T |
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| Q |
348 |
gagatt |
353 |
Q |
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|||||| |
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| T |
42156722 |
gagatt |
42156717 |
T |
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