View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_high_86 (Length: 328)

Name: NF18178_high_86
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_high_86
NF18178_high_86
[»] chr4 (10 HSPs)
chr4 (76-315)||(33990233-33990472)
chr4 (105-254)||(33992878-33993027)
chr4 (17-75)||(18136054-18136113)
chr4 (17-75)||(49123262-49123321)
chr4 (18-75)||(4279277-4279335)
chr4 (18-74)||(25358213-25358270)
chr4 (17-76)||(9446264-9446324)
chr4 (16-75)||(29380850-29380910)
chr4 (24-75)||(32208849-32208901)
chr4 (275-315)||(33993199-33993239)
[»] chr7 (7 HSPs)
chr7 (16-75)||(6911082-6911142)
chr7 (17-73)||(18311881-18311938)
chr7 (17-72)||(30709328-30709384)
chr7 (17-75)||(18022645-18022704)
chr7 (17-75)||(21554393-21554452)
chr7 (19-75)||(35665877-35665934)
chr7 (16-75)||(44958446-44958506)
[»] chr1 (4 HSPs)
chr1 (17-72)||(20756022-20756078)
chr1 (17-75)||(52254183-52254242)
chr1 (24-75)||(3679934-3679986)
chr1 (17-72)||(32906181-32906237)
[»] chr5 (11 HSPs)
chr5 (17-76)||(21050574-21050634)
chr5 (17-75)||(5614166-5614225)
chr5 (17-75)||(14318045-14318104)
chr5 (17-75)||(29693031-29693090)
chr5 (17-75)||(42207242-42207301)
chr5 (24-80)||(29875395-29875452)
chr5 (16-75)||(293828-293888)
chr5 (16-75)||(5904008-5904068)
chr5 (17-72)||(9532476-9532532)
chr5 (17-76)||(24782216-24782275)
chr5 (24-75)||(29151516-29151568)
[»] chr3 (8 HSPs)
chr3 (17-74)||(46186410-46186468)
chr3 (17-75)||(19656541-19656600)
chr3 (25-75)||(20757724-20757775)
chr3 (17-75)||(21159453-21159512)
chr3 (17-75)||(38232241-38232300)
chr3 (17-75)||(46751271-46751330)
chr3 (16-75)||(35533558-35533618)
chr3 (24-75)||(40169344-40169396)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-76)||(365978-366038)
[»] scaffold0060 (2 HSPs)
scaffold0060 (17-75)||(8330-8389)
scaffold0060 (18-75)||(8584-8642)
[»] scaffold0021 (1 HSPs)
scaffold0021 (17-75)||(12477-12536)
[»] chr6 (3 HSPs)
chr6 (17-75)||(25431576-25431635)
chr6 (17-73)||(14428891-14428948)
chr6 (24-75)||(33808620-33808672)
[»] chr2 (7 HSPs)
chr2 (17-75)||(1497610-1497669)
chr2 (17-75)||(2265338-2265397)
chr2 (21-75)||(45442641-45442696)
chr2 (18-75)||(34318025-34318083)
chr2 (16-72)||(38231761-38231818)
chr2 (16-75)||(10671881-10671941)
chr2 (17-72)||(25954367-25954423)
[»] chr8 (3 HSPs)
chr8 (17-74)||(6146517-6146575)
chr8 (16-75)||(9175012-9175072)
chr8 (24-75)||(35143792-35143844)
[»] scaffold0166 (1 HSPs)
scaffold0166 (17-76)||(24599-24658)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 76 - 315
Target Start/End: Original strand, 33990233 - 33990472
Alignment:
Q  76 gtattagaataagtaggatttaaaacggttttaaataaccatcgtattaacgatattgatcacgtccaattttttatatttcgaaaaactgcagtcaaat 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33990233 gtattagaataagtaggatttaaaacggttttaaataaccatcgtattaacgatattgatcacgtccaattttttatatttcgaaaaactgtagtcaaat 33990332  T
Q  176 taatgtaatgtggccaatgcaacctcaatcatagcagtgttcttgttttaataatatataaattgtcacaaccaagttgacaaatttgttcataactact 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33990333 taatgtaatgtggccaatgcaacctcaatcatagcagtgttcttgttttaataatatataaattgtcacaaccaagttgacaaatttattcataactact 33990432  T
Q  276 tgtaaagtcatttatttgattgattataatttgctaagta 315  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33990433 tgtaaagtcatttatttgattgattataatttgctaagta 33990472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 254
Target Start/End: Original strand, 33992878 - 33993027
Alignment:
Q  105 tttaaataaccatcgtattaacgatattgatcacgtccaattttttatatttcgaaaaactg-cagtcaaattaatgtaatgtggccaatgcaacctcaa 203  Q
    ||||||||| | |||| ||||| ||| |||||||||||||||||||||||||| ||||| ||  ||||||||     || ||||||||||||||||||||    
T  33992878 tttaaataatcgtcgtcttaaccatagtgatcacgtccaattttttatatttcaaaaaattgtaagtcaaat-----tattgtggccaatgcaacctcaa 33992972  T
Q  204 tcatagcag----tgttcttgttttaataatatataaattgtcacaaccaagttg 254  Q
    |||||| ||    |||| ||||||  |||| |||||||||||||| |||||||||    
T  33992973 tcatagtagtgtttgttgttgtttcgataacatataaattgtcacgaccaagttg 33993027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 18136054 - 18136113
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||| ||||||||| ||||||||| ||||||| || |||||||| |||||||||||||    
T  18136054 tttacagggactaaaaccaaaacgaggcatatttgtagggattaaagtcatattttagcc 18136113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 49123262 - 49123321
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||| ||||||||| ||||||||| ||||||| || |||||||| |||||||||||||    
T  49123262 tttacagggactaaaaccaaaacgaggcatatttgtagggattaaagtcatattttagcc 49123321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4279277 - 4279335
Alignment:
Q  18 ttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    ||||||||||||||| ||||||||| |||||||  | ||| ||||||||||||||||||    
T  4279277 ttacaaggactaaaaccaaaacgagccatatttgcagggactaaaatcatattttagcc 4279335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 25358270 - 25358213
Alignment:
Q  18 ttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagc 74  Q
    ||||||||||| ||| |||||||| ||||||||  | |||||||||||||||||||||    
T  25358270 ttacaaggactgaaaccaaaacgaagcatatttgcatggattaaaatcatattttagc 25358213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 9446264 - 9446324
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagccg 76  Q
    |||||| |||| |||| ||||||||| |||||||| | ||| |||||||||||||||||||    
T  9446264 tttacagggacgaaaaccaaaacgagacatatttacagggactaaaatcatattttagccg 9446324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 29380850 - 29380910
Alignment:
Q  16 atttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    ||||||||||||||||| ||||||||| |||||||  | ||| ||||| ||||||||||||    
T  29380850 atttacaaggactaaaaccaaaacgagacatatttgcagggactaaaaccatattttagcc 29380910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 32208849 - 32208901
Alignment:
Q  24 ggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||||| ||||||||  | ||||||||| ||||||||||||    
T  32208849 ggactaaaatcaaaacgaggcatatttgcagggattaaaaccatattttagcc 32208901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 33993199 - 33993239
Alignment:
Q  275 ttgtaaagtcatttatttgattgattataatttgctaagta 315  Q
    ||||||||||||| ||||||||| ||||||||||| |||||    
T  33993199 ttgtaaagtcattcatttgattggttataatttgcgaagta 33993239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 6911142 - 6911082
Alignment:
Q  16 atttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  6911142 atttacaaggactaaaatcaaaacgagacatatttataaggaccaaaatcatattttagcc 6911082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18311881 - 18311938
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttag 73  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||    
T  18311881 tttacaaggactaaaatcaaaacgaggcatatttagagggattaaaatcatattttag 18311938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 30709384 - 30709328
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatatttta 72  Q
    |||||||||||||||| |||||||| |||||||| || ||| |||||||||||||||    
T  30709384 tttacaaggactaaaaccaaaacgaggcatatttgtagggactaaaatcatatttta 30709328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 18022645 - 18022704
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||| |||||||| ||||||||  | ||| ||||||||||||||||||    
T  18022645 tttacaaggactaaaaccaaaacgaggcatatttgcagggactaaaatcatattttagcc 18022704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 21554452 - 21554393
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||| |||||||| ||||||||  | ||| ||||||||||||||||||    
T  21554452 tttacaaggactaaaaccaaaacgaggcatattttcagggactaaaatcatattttagcc 21554393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 35665934 - 35665877
Alignment:
Q  19 tacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||| ||||||||| ||||||||| ||||||| || ||||||||| ||||||||||||    
T  35665934 tacagggactaaaaccaaaacgaggcatatttgtagggattaaaaccatattttagcc 35665877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 44958446 - 44958506
Alignment:
Q  16 atttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    ||||||| ||||||||| ||||||||| ||||||| || |||  |||||||||||||||||    
T  44958446 atttacagggactaaaaccaaaacgagacatatttgtagggaccaaaatcatattttagcc 44958506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 20756078 - 20756022
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatatttta 72  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  20756078 tttacaaggactaaaaccaaaacgagacatatttacaaggattaaaatcatatttta 20756022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 52254242 - 52254183
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||| |||||||| ||||||||  | ||||||||| ||||||||||||    
T  52254242 tttacaaggactaaaaccaaaacgaggcatatttgcagggattaaaaccatattttagcc 52254183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 3679934 - 3679986
Alignment:
Q  24 ggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||||| ||||||||  | ||| ||||||||||||||||||    
T  3679934 ggactaaaatcaaaacgaggcatatttgcagggactaaaatcatattttagcc 3679986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 32906181 - 32906237
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatatttta 72  Q
    ||||||| |||||||||||||||||| |||||||  |||||  ||||||||||||||    
T  32906181 tttacaatgactaaaatcaaaacgagacatatttgcaaggaccaaaatcatatttta 32906237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 21050634 - 21050574
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagccg 76  Q
    |||||| |||||||||||||||||| |||||||| || ||| |||||||||||||||||||    
T  21050634 tttacagggactaaaatcaaaacgaagcatatttgtagggactaaaatcatattttagccg 21050574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 5614225 - 5614166
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||||||||||||| |||||||  | ||| ||||| ||||||||||||    
T  5614225 tttacaaggactaaaatcaaaacgagacatatttgcagggactaaaaccatattttagcc 5614166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 14318104 - 14318045
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||| ||||||||| |||||||  ||||| ||||| ||||||||||||    
T  14318104 tttacaaggactaaaaccaaaacgagacatatttgcaaggactaaaaccatattttagcc 14318045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 29693031 - 29693090
Alignment:
Q  17 tttacaaggactaaaatcaaaacg-agcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||| ||||||| |||||||||  | ||| ||||||||||||||||||    
T  29693031 tttacaaggactaaaaccaaaacgaagcatatttgcagggactaaaatcatattttagcc 29693090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 42207301 - 42207242
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||| ||||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||    
T  42207301 tttacagggactaaaaccaaaacgagacatatttacaaggactaaaaccatattttagcc 42207242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 29875452 - 29875395
Alignment:
Q  24 ggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagccgtatt 80  Q
    ||||||||| ||||||||| |||||||  | |||||||||||||||||||||| ||||    
T  29875452 ggactaaaaccaaaacgaggcatatttgcagggattaaaatcatattttagccttatt 29875395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 293888 - 293828
Alignment:
Q  16 atttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    ||||||| |||||||||||||||||| ||||||||  | ||| ||||| ||||||||||||    
T  293888 atttacatggactaaaatcaaaacgaggcatatttgcagggactaaaaccatattttagcc 293828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 5904068 - 5904008
Alignment:
Q  16 atttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    ||||||| |||||||||||||||||| ||||||||  |||||  |||| ||||||||||||    
T  5904068 atttacagggactaaaatcaaaacgaggcatatttgcaaggagcaaaaccatattttagcc 5904008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 9532476 - 9532532
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatatttta 72  Q
    |||||||||||||||| |||||||| ||||||||  ||||| ||||| |||||||||    
T  9532476 tttacaaggactaaaaccaaaacgaggcatatttgcaaggactaaaaccatatttta 9532532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 24782216 - 24782275
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagccg 76  Q
    |||||| |||||||||||||||||| |||||||| | |||| |||||| ||||||||||||    
T  24782216 tttacagggactaaaatcaaaacgaggcatatttgt-aggactaaaattatattttagccg 24782275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 29151568 - 29151516
Alignment:
Q  24 ggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||||| ||||||||  | ||| ||||||||||||||||||    
T  29151568 ggactaaaatcaaaacgaggcatatttgcagggactaaaatcatattttagcc 29151516  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 46186468 - 46186410
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagc 74  Q
    ||||||||||||||||||||||||| ||||||||  | ||| |||||||||||||||||    
T  46186468 tttacaaggactaaaatcaaaacgaggcatatttgcagggactaaaatcatattttagc 46186410  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 19656600 - 19656541
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    ||||||||||||||||||||||||| ||||||||  | ||| ||||| ||||||||||||    
T  19656600 tttacaaggactaaaatcaaaacgaggcatatttgcatggactaaaaccatattttagcc 19656541  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 20757724 - 20757775
Alignment:
Q  25 gactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||| |||||||| ||||||||| | ||||||||||||||||||||||    
T  20757724 gactaaaaccaaaacgatgcatatttacagggattaaaatcatattttagcc 20757775  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 21159512 - 21159453
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||||||||||||| |||||||  | ||| ||||| ||||||||||||    
T  21159512 tttacaaggactaaaatcaaaacgagacatatttgcagggactaaaaccatattttagcc 21159453  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 38232300 - 38232241
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||||||||||||| |||||||  | |||  |||||||||||||||||    
T  38232300 tttacaaggactaaaatcaaaacgagacatatttgcagggaccaaaatcatattttagcc 38232241  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 46751330 - 46751271
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||| |||||||| ||||||||  | ||||||||| ||||||||||||    
T  46751330 tttacaaggactaaaaccaaaacgaggcatatttgcagggattaaaaccatattttagcc 46751271  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 35533558 - 35533618
Alignment:
Q  16 atttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||||| |||||||||||||||||| ||||| | || |||  |||||||||||||||||    
T  35533558 atttacaatgactaaaatcaaaacgagacatatgtgtagggagcaaaatcatattttagcc 35533618  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 40169396 - 40169344
Alignment:
Q  24 ggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    ||||||||||||||||||| |||||||  | ||||||||| ||||||||||||    
T  40169396 ggactaaaatcaaaacgagacatatttgcagggattaaaaccatattttagcc 40169344  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 366038 - 365978
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagccg 76  Q
    |||||| ||||||||| ||||||||| |||||||  ||||||||||| |||||||||||||    
T  366038 tttacagggactaaaaccaaaacgaggcatatttgcaaggattaaaaccatattttagccg 365978  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 8389 - 8330
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||||||||||||| |||||||  | ||| ||||| ||||||||||||    
T  8389 tttacaaggactaaaatcaaaacgagacatatttgcagggactaaaaccatattttagcc 8330  T

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Target: scaffold0060; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 8584 - 8642
Alignment:
Q  18 ttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    ||||||||||||||||||||||||| |||||||  | ||| ||||| ||||||||||||    
T  8584 ttacaaggactaaaatcaaaacgagacatatttgcagggactaaaaccatattttagcc 8642  T

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Target: scaffold0021 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 12477 - 12536
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||| |||||||| ||||||||  | ||| ||||||||||||||||||    
T  12477 tttacaaggactaaaaccaaaacgaggcatatttgcagggactaaaatcatattttagcc 12536  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 25431635 - 25431576
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||| | ||||||||||||||||  |||||||| | ||||||||||||||||||||||    
T  25431635 tttacaggaactaaaatcaaaacgaaacatatttacagggattaaaatcatattttagcc 25431576  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 14428891 - 14428948
Alignment:
Q  17 tttacaaggactaaaatcaaaacg-agcatatttataaggattaaaatcatattttag 73  Q
    |||||||||||||||| ||||||| |||||||||  ||||| ||||| ||||||||||    
T  14428891 tttacaaggactaaaaccaaaacgaagcatatttgcaaggactaaaaccatattttag 14428948  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 33808672 - 33808620
Alignment:
Q  24 ggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||||| ||||||||| | ||| ||||| ||||||||||||    
T  33808672 ggactaaaatcaaaacgaggcatatttacagggactaaaaccatattttagcc 33808620  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 1497669 - 1497610
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||| |||||||||||||||||| ||||||||  ||||| ||||| ||||||||||||    
T  1497669 tttacagggactaaaatcaaaacgaggcatatttgcaaggactaaaaccatattttagcc 1497610  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 2265338 - 2265397
Alignment:
Q  17 tttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||| ||||||||| ||||||||| |||||||  ||||| ||||||||||||||||||    
T  2265338 tttacagggactaaaaccaaaacgagacatatttgcaaggactaaaatcatattttagcc 2265397  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 45442641 - 45442696
Alignment:
Q  21 caaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||| ||||||||| |||||||  ||||| ||||||||||||||||||    
T  45442641 caaggactaaaaccaaaacgagacatatttgcaaggactaaaatcatattttagcc 45442696  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 34318025 - 34318083
Alignment:
Q  18 ttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagcc 75  Q
    |||||||||||||||||||||||| |||||||| || |||  |||| ||||||||||||    
T  34318025 ttacaaggactaaaatcaaaacgaggcatatttgtagggaccaaaaccatattttagcc 34318083  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 38231761 - 38231818
Alignment:
Q  16 atttacaaggactaaaatcaaaacg-agcatatttataaggattaaaatcatatttta 72  Q
    ||||||| ||||||||||||||||| |||||||||  | |||| ||||||||||||||    
T  38231761 atttacatggactaaaatcaaaacgaagcatatttggagggatcaaaatcatatttta 38231818  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 10671881 - 10671941
Alignment:
Q  16 atttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    ||||||||||||||||| ||||||||| |||||||  | ||| ||||| ||||||||||||    
T  10671881 atttacaaggactaaaaccaaaacgagacatatttgcagggactaaaaccatattttagcc 10671941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 25954367 - 25954423
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatatttta 72  Q
    |||||| |||||||||||||||||| ||||||||  ||||| ||||| |||||||||    
T  25954367 tttacagggactaaaatcaaaacgaggcatatttgcaaggactaaaaccatatttta 25954423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 6146575 - 6146517
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagc 74  Q
    |||||||||||||||| |||||||| ||||||||  ||||| ||||| |||||||||||    
T  6146575 tttacaaggactaaaaccaaaacgaggcatatttgcaaggactaaaaccatattttagc 6146517  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 9175072 - 9175012
Alignment:
Q  16 atttacaaggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    ||||||| ||||||||| ||||||||| |||||||  |||||  |||||||||||||||||    
T  9175072 atttacagggactaaaaccaaaacgagacatatttgcaaggaccaaaatcatattttagcc 9175012  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 35143792 - 35143844
Alignment:
Q  24 ggactaaaatcaaaacgag-catatttataaggattaaaatcatattttagcc 75  Q
    ||||||||| ||||||||| |||||||| | ||||||||| ||||||||||||    
T  35143792 ggactaaaaccaaaacgaggcatatttacacggattaaaaccatattttagcc 35143844  T

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Target: scaffold0166 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 24599 - 24658
Alignment:
Q  17 tttacaaggactaaaatcaaaacga-gcatatttataaggattaaaatcatattttagccg 76  Q
    |||||| |||||||||||||||||| |||||||| | |||| |||||| ||||||||||||    
T  24599 tttacagggactaaaatcaaaacgaggcatatttgt-aggactaaaattatattttagccg 24658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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