View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_87 (Length: 327)
Name: NF18178_high_87
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_87 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 115 - 327
Target Start/End: Original strand, 30885518 - 30885730
Alignment:
| Q |
115 |
gggctcaatacatgtgtgctcttttactgtcatggtgcagcatctattggctgctgctgatctctataatcttgacaggctaaaaatgttatgtgaatca |
214 |
Q |
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| T |
30885518 |
gggctcaatacatgtgtgctcttttactgtcatggtgcagcatctattggctgctgctgatctctataatcttgacaggctaaaaatgttatgtgaatca |
30885617 |
T |
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| Q |
215 |
aaattgtgcgaagaaatcaatactgagaccgtagccacaacacttgccctggctgagcaacaccattgtccacagctcaagacgatctgtttgaaattta |
314 |
Q |
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| T |
30885618 |
aaattgtgtgaagaaatcaatactgagaccgtagccacgacacttgccctggctgagcaacaccattgtccacagctcaagacgatctgtttgaaattta |
30885717 |
T |
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| Q |
315 |
ttgcaaatccgac |
327 |
Q |
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| T |
30885718 |
ttgcaaatccgac |
30885730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 30885093 - 30885206
Alignment:
| Q |
1 |
ataatctgtttgcttttgtttgtgaagcagtcagttgaaactgggtatatatattataaaaataattgtttgtggtagagtaaaatagggtgagttgtct |
100 |
Q |
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| T |
30885093 |
ataatctgtttgcttttgtttgtgaagcagtcagttgaaactgggtgtata--ttataaaaataattgtttgtggtagagtaaaatagggtgagttgtct |
30885190 |
T |
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| Q |
101 |
ctatcaaaataaacgg |
116 |
Q |
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| T |
30885191 |
ctatcaaaataaacgg |
30885206 |
T |
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