View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_9 (Length: 680)
Name: NF18178_high_9
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 185 - 670
Target Start/End: Original strand, 5246947 - 5247434
Alignment:
| Q |
185 |
aatggttaagaaattgatccacatttcgataaacaaaaa-tggaaaattaattttgtttatcgcttagaaatgtagatattaaccagtttcaacctaagc |
283 |
Q |
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| T |
5246947 |
aatggttaagaaaatgatccacatttcgataaacaaaaactggaaaattaattttgtttatcgcttagaaatgtagatattaaccagtttcaacctaagc |
5247046 |
T |
|
| Q |
284 |
gaaaattcacagacacaacataaaaatataataagaatttggatactacttatagccaagccaagcaaagagtagaaaaaatgaaagcaatggt-gacaa |
382 |
Q |
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| T |
5247047 |
gaaaattcacagacacaacataaaaatataataagaatttggatactacttgtagccaagccaagcaaagagtagaaaaaatgaaaacaatggtagacaa |
5247146 |
T |
|
| Q |
383 |
taaaatgcattgcaaatcaaaagaagaaatgattttaatgattgattccaaatcagagtgaaagaatattttaatacacatatggtacaataagtcatct |
482 |
Q |
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| T |
5247147 |
taaaatgcattgcaaatgaaaagaagaaatgattttaatgattgattccaaatcagagtgaaagaatattttaatacacatatggtacaataagtcatct |
5247246 |
T |
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| Q |
483 |
ctcttatagctacattatagcttccctattactccattatagtccttggtgttggcttattggtttaccttctgtaatccttacgtcattctctcttcnn |
582 |
Q |
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| T |
5247247 |
ctcttatagctacattatagcttccctattactccattatagtccttggtgttggcttattggtttaccttctgtaatccttacgtcattctctcttctt |
5247346 |
T |
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| Q |
583 |
nnnnnctttacagcagcagtaaacccagtaaacccatggtgtgtacaagaatatgaaatttagctgacccaatcaacacctgtctgtg |
670 |
Q |
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| T |
5247347 |
tttttctttacagcagcagtaaacccagtaaacccatggtgtgtacaagaatatgaaatttagctgacccaatcaacacctgtctgtg |
5247434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 5246705 - 5246861
Alignment:
| Q |
17 |
atatttggcatataacatgaatctagcagagcaaattgaggaaattctcgcaggaaaccactgtttaaggctatgtcaacagagagctatgcagtagcca |
116 |
Q |
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| T |
5246705 |
atatttggcatataacatgaatctagcagagcaaattgaggaaattctggcaggaaaccc---------------------gagagctatgcagtagcca |
5246783 |
T |
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| Q |
117 |
gtgcagaatgttatcaatc----acaaggaattgtattaaatcttgttgcaacgacaaatagaaaacgacagaatggt |
190 |
Q |
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| T |
5246784 |
gtgcagaatgttatgaatcgatcacaaggaactgtattaaatcttgttgcaacgacaaatagaaaacaacagaatggt |
5246861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 5261242 - 5261338
Alignment:
| Q |
17 |
atatttggcatataacatgaatctagcagagcaaattgaggaaattctcgcaggaaaccactgtttaaggctatgtcaacagagagctatgcagtagcca |
116 |
Q |
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| T |
5261242 |
atatttggcatgtaaca---atctagcatggaaaattgaggaaattcttgcaggcaaccactgtttgaggctatatcaatagagagctatgcagtagcca |
5261338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 6165703 - 6165767
Alignment:
| Q |
18 |
tatttggcatataacatgaatctagcagagcaaattgaggaaattctcgcaggaaaccactgttt |
82 |
Q |
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| T |
6165703 |
tatttggcatataacatgaatatagcagagaaaaatgagaaaattcttgtaggcagccactgttt |
6165767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 6234936 - 6234985
Alignment:
| Q |
20 |
tttggcatataacatgaatctagcagagcaaattgaggaaattctcgcag |
69 |
Q |
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| T |
6234936 |
tttggcatataacatgaatatagcagagaaaagtgagaaaattcttgcag |
6234985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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