View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_92 (Length: 317)
Name: NF18178_high_92
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_92 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 5943025 - 5943176
Alignment:
| Q |
1 |
aaggtgactaaaagtcttcgcctccacacctcaaaatgtacacaaagaagcattttgatatctcaagacacgtatttctaaaacattagtttacatatcg |
100 |
Q |
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| T |
5943025 |
aaggtgactaacagtcttcgcctccacacctcaaaatgtacacaaagaagccttttgatatctcaagacacgtatttctaaaacattagtttacatatcg |
5943124 |
T |
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| Q |
101 |
attgtagtggtttggtttagttatggagttgtgaattgaaaattaaaccgaa |
152 |
Q |
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| T |
5943125 |
attgcagtggtttggtttagttatggagttgtgaattgaaaattaaaccgaa |
5943176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 5943248 - 5943307
Alignment:
| Q |
237 |
aagattcctaactattaaacgtggaacatctttgaaaccacctatatggtggcatatctt |
296 |
Q |
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| T |
5943248 |
aagattcctaactattaaacgtggaacatctttgaaaccacctatatggtggcatatctt |
5943307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 5978078 - 5978110
Alignment:
| Q |
240 |
attcctaactattaaacgtggaacatctttgaa |
272 |
Q |
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| T |
5978078 |
attcctaactattaaacgtggaacatctttgaa |
5978110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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