View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_93 (Length: 317)
Name: NF18178_high_93
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_93 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38181130 - 38180888
Alignment:
| Q |
1 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181130 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
38181031 |
T |
|
| Q |
101 |
tcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
200 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181030 |
tcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
38180931 |
T |
|
| Q |
201 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38180930 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38180888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38190001 - 38190243
Alignment:
| Q |
1 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38190001 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
38190100 |
T |
|
| Q |
101 |
tcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
200 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38190101 |
tcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
38190200 |
T |
|
| Q |
201 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38190201 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38190243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38208354 - 38208112
Alignment:
| Q |
1 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38208354 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
38208255 |
T |
|
| Q |
101 |
tcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
200 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38208254 |
tcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
38208155 |
T |
|
| Q |
201 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208154 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38208112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38217226 - 38217468
Alignment:
| Q |
1 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38217226 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
38217325 |
T |
|
| Q |
101 |
tcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
200 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38217326 |
tcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
38217425 |
T |
|
| Q |
201 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217426 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38217468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38456490 - 38456248
Alignment:
| Q |
1 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456490 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
38456391 |
T |
|
| Q |
101 |
tcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
200 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456390 |
tcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
38456291 |
T |
|
| Q |
201 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456290 |
gcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38456248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 26033106 - 26033324
Alignment:
| Q |
1 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26033106 |
ttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatgaaattcatcttcttgtgaatcctcaatttgttggctactat |
26033205 |
T |
|
| Q |
101 |
tcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
200 |
Q |
| |
|
||| ||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
26033206 |
tcagctcatcatccagttccatgttgtcagggaagggtgacaagccacgcctttcaagttttctttttctcgcgttccaaaagttcttgatgtcattatc |
26033305 |
T |
|
| Q |
201 |
gcttcttcccggtaactga |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
26033306 |
gcttcttcccggtaactga |
26033324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 38447566 - 38447447
Alignment:
| Q |
99 |
attcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatta |
198 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
38447566 |
attcaactcatcatccagttccatgttgtcagggaagggtgacaagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtcatta |
38447467 |
T |
|
| Q |
199 |
tcgcttcttcccggtaactg |
218 |
Q |
| |
|
||| ||||||| || ||||| |
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|
| T |
38447466 |
tcggttcttccaggcaactg |
38447447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 53351249 - 53351429
Alignment:
| Q |
38 |
taaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctact------------attcaactcatgatcaggttccatgtt |
125 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||| || ||||||| || |
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|
| T |
53351249 |
taaatttcacttgcggtatattaaattcatcatcttgtgaatccttaacttgttggctatttgaaccacttttattcaactcatcattcagttccatctt |
53351348 |
T |
|
| Q |
126 |
gtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc |
209 |
Q |
| |
|
||| || |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
53351349 |
gtcaggaaagggtgacat---acgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcattatcgcttcttcc |
53351429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 6067792 - 6067860
Alignment:
| Q |
2 |
tttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttc |
71 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
6067792 |
tttcatttatctcataaaaaatttatggatattttctaaatttcaattgtggtata-taaattcatcttc |
6067860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 38342826 - 38342739
Alignment:
| Q |
122 |
tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc |
209 |
Q |
| |
|
||||||| |||||||||||||||| | | ||| | ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
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|
| T |
38342826 |
tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc |
38342739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 38447019 - 38446932
Alignment:
| Q |
122 |
tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc |
209 |
Q |
| |
|
||||||| |||||||||||||||| | | ||| | ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
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|
| T |
38447019 |
tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc |
38446932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 4121709 - 4121643
Alignment:
| Q |
134 |
agggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
200 |
Q |
| |
|
||||||| | ||||| ||||| | |||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
4121709 |
agggtgataggccactctttttatattttctttttcttgcattccaaaagttcttgatagcattatc |
4121643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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