View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_95 (Length: 310)
Name: NF18178_high_95
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_95 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 24615505 - 24615352
Alignment:
| Q |
15 |
acttactactctcaaacctcaacaaacatcttgtctccaaaatttcctttgagaattgtgctcccaaacaatgaacactgctcacaaagaatgtgttgat |
114 |
Q |
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| T |
24615505 |
acttactactctcaaacctcaacaaacatcttgtctccaaaatttcctttgagaattgtgctcccaaacaatgaacactgctcacaaagaatgtgttgat |
24615406 |
T |
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| Q |
115 |
tttgtggtcatcctttgtatcggtcctnnnnnnntattggctatttgatccaat |
168 |
Q |
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| T |
24615405 |
tttgtggtcatcctttgtatcggtcctaaaaaaatattggctctttgatccaat |
24615352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 186 - 303
Target Start/End: Complemental strand, 24615296 - 24615179
Alignment:
| Q |
186 |
taaacaaacaagttctttttgcatgtgccatcttaaacctttatcttcattcattcaatcatcttctttttcagtcaaaaattctcatcacatttcccaa |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24615296 |
taaacaaacaagttctttttgcatgtgccatcttaaacctttatcttcattcattcaatcatcttctttttcagtcaaaaattctcatcacatttcccaa |
24615197 |
T |
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| Q |
286 |
atcatacatttctaattt |
303 |
Q |
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|||||||||||||||||| |
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| T |
24615196 |
atcatacatttctaattt |
24615179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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