View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_high_99 (Length: 304)
Name: NF18178_high_99
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_high_99 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 53677204 - 53677481
Alignment:
| Q |
19 |
ggactgttaccagaaaatgcatctgcaatatacatcaaacagagttgagttttaatatttcacacatgaatttcatttaaaattatctgtaaatgaaata |
118 |
Q |
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| T |
53677204 |
ggactgttaccagaaaatgcatctgcaatatacatcaaacagagttgagttttaatatttcacacatgaatttcatttaaaattatctgtaaatgaaata |
53677303 |
T |
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| Q |
119 |
aaaatagtgaaacagtagtacctggtgagggggtgtaaacaggaccctgaactttgaagaagtgaacttgttcgtaatgataaagaagattcaaatagtg |
218 |
Q |
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| T |
53677304 |
aaaatagtgaaacagtagtacctggtgagggggtgtaaacaggaccctgaactttgaagaagtgaacttgttcgtaatgataaagaagattcaaatagtg |
53677403 |
T |
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| Q |
219 |
ttttcttagtacaaaagaagcgcttgtagtagtagatgagaatctaaatacactacctacttctctccatttcttctc |
296 |
Q |
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| T |
53677404 |
ttttcttagtacaaaagaagcgcttgtagtagtagatgagaatctaaatacactacctacttctctccatttcttctc |
53677481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 32985097 - 32985248
Alignment:
| Q |
20 |
gactgttaccagaaaatgcatctgcaatatacatcaaacagagttgagttttaatatttcacacatgaatttcatttaaaattatctgtaaatg-aaata |
118 |
Q |
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||||||| ||||||| |||| |||||||||||| ||| |||||||||||| ||| ||||||||| |||||||| | ||||| |||| | ||| | |
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| T |
32985097 |
gactgtttccagaaattgcacctgcaatataca---aaccgagttgagttttgggattgtacacatgaagttcatttatatctatctataaacgtaaaga |
32985193 |
T |
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| Q |
119 |
aaaatagtgaaacagtagtacctggtgagggggtgtaaacaggaccctgaactttgaa |
176 |
Q |
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|||| ||||||| |||||||| |||||| ||||| | |||||||||||||||||| |
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| T |
32985194 |
aaaacagtgaaa---tagtaccttatgagggagtgtatataggaccctgaactttgaa |
32985248 |
T |
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