View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_100 (Length: 307)

Name: NF18178_low_100
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_100
NF18178_low_100
[»] chr2 (13 HSPs)
chr2 (9-307)||(32174513-32174811)
chr2 (9-152)||(32182707-32182850)
chr2 (207-307)||(32118817-32118917)
chr2 (224-303)||(32156741-32156820)
chr2 (204-303)||(32182603-32182702)
chr2 (226-307)||(32206826-32206907)
chr2 (226-303)||(32110557-32110634)
chr2 (229-303)||(32211904-32211978)
chr2 (229-303)||(32157851-32157925)
chr2 (29-208)||(32156933-32157114)
chr2 (9-53)||(32206013-32206057)
chr2 (10-77)||(32211741-32211808)
chr2 (34-104)||(32119073-32119143)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 32174811 - 32174513
Alignment:
Q  9 gagatgaagataaagacgtggttgataatggatacaataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatactaaaatatc 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32174811 gagaagaagataaagacgtggttgataatggatacaataaggtatatatttttcttcaaatatatcattaatctttgggtttcattcatactaaaatatc 32174712  T
Q  109 attgggatgcataagaacaagaaaagatttagaagtatatgagcgtacatgattctagtgtagatacatttaactatagtcataatttagccaagaaatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32174711 attgggatgcataagaacaagaaaagatttagaagtatatgagcgtacatgattctagtgtagatacatttaactatagtcataatttagccaagaaatt 32174612  T
Q  209 aacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgtattc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32174611 aacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgtattc 32174513  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 32182850 - 32182707
Alignment:
Q  9 gagatgaagataaagacgtggttgataatggatacaataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatactaaaatatc 108  Q
    |||| ||||| ||||| || ||| |||||||| ||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  32182850 gagaagaagagaaagaagttgttaataatggagacaataaggtatatatttttcttcaaatataccattaatatttgagtttcattcatactaaaatgtc 32182751  T
Q  109 attgggatgcataagaacaagaaaagatttagaagtatatgagc 152  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  32182750 attgggatgcataaaaactagaaaagatttagaagtatatgagc 32182707  T

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Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 32118917 - 32118817
Alignment:
Q  207 ttaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgtatt 306  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||    
T  32118917 ttaacgtttgttgatattgtcaacaggtgacactttcaggactattgaatgctgttgatggtctttggtcatgctgcggagaagaacacataattgtatt 32118818  T
Q  307 c 307  Q
    |    
T  32118817 c 32118817  T

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Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 32156820 - 32156741
Alignment:
Q  224 tgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32156820 tgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt 32156741  T

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Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 204 - 303
Target Start/End: Complemental strand, 32182702 - 32182603
Alignment:
Q  204 aaattaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| || |||||||| ||||||||||||||    
T  32182702 aaattaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt 32182603  T

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Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 32206826 - 32206907
Alignment:
Q  226 tcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgtattc 307  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32206826 tcaacaggtgacactttcaggactgttgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgtattc 32206907  T

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Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 32110634 - 32110557
Alignment:
Q  226 tcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt 303  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32110634 tcaacagatgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt 32110557  T

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Target: chr2; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 32211904 - 32211978
Alignment:
Q  229 acaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt 303  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32211904 acagatgacactttcgggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt 32211978  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 32157925 - 32157851
Alignment:
Q  229 acaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt 303  Q
    |||| |||||||||| ||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||    
T  32157925 acagatgacactttcgggactattgaatgcgacagatggtctctggtcgtgctgtggagaagaacacataattgt 32157851  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 32157114 - 32156933
Alignment:
Q  29 gttgataatggatacaat---aaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatactaaaatatcattgggatgcataagaa 125  Q
    |||||||||||| |||||   ||||| |||||  ||||||||||||||||||||| |||| ||||||||| ||||||||| |||    ||||||||| ||    
T  32157114 gttgataatggagacaatgataaggtgtatatttttcttcaaatatatcattaatctttgagtttcattcgtactaaaatgtcacacagatgcataa-aa 32157016  T
Q  126 caagaaaagatttagaagtatatgagcgtacatgattctagtgtagatacatttaactatagtcataatttagccaagaaatt 208  Q
    | |||| | ||| | ||  ||   | | ||||||| |||||  |||||| ||||||||| ||||||||||||||||| |||||    
T  32157015 ctagaagatattaaaaataattcaaccctacatgaatctagcttagatatatttaactacagtcataatttagccaacaaatt 32156933  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 32206013 - 32206057
Alignment:
Q  9 gagatgaagataaagacgtggttgataatggatacaataaggtat 53  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  32206013 gagaagaagataaagacgtggttgataatggatacaataaggtat 32206057  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 32211741 - 32211808
Alignment:
Q  10 agatgaagataaagacgtggttgataatggatacaataaggtatatatcattcttcaaatatatcatt 77  Q
    ||||||| || |||| || ||||||||||||||||||||||||| |||  ||||| ||||||||||||    
T  32211741 agatgaaaatgaagaagttgttgataatggatacaataaggtatgtatttttctttaaatatatcatt 32211808  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 32119143 - 32119073
Alignment:
Q  34 taatggatacaataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatactaaaa 104  Q
    ||||||| ||||||||||||  ||   || |||||||||||||| || |||| ||||||||||||||||||    
T  32119143 taatggagacaataaggtatgcatttctcgtcaaatatatcattcatctttgagtttcattcatactaaaa 32119073  T

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