View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_101 (Length: 305)
Name: NF18178_low_101
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 37245117 - 37244838
Alignment:
| Q |
12 |
agagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccaaggtttttcacaatagtacttcatattcgtcatca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245117 |
agagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccaaggtttttcacaatagtacttcatattcgtcatca |
37245018 |
T |
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| Q |
112 |
ccatatcaagttcaccattgcgatccatggagatttctttggccaatgagttgaacaatttggccacaagtttatcgttcccaagagcgttgattaggat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245017 |
ccatatcaagttcaccattgcgatccatggagatttctttggccaatgagttgaacaatttggccacaagtttatcgttcccaagagcgttgattaggat |
37244918 |
T |
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| Q |
212 |
cccacttctactaagaaatggaacgtcctgagcagtgtcgatgatggtgtccataaaacatataaaagatgttacctcgt |
291 |
Q |
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| T |
37244917 |
cccacttctactaagaaatggaacgtcctgagcagtgtcgatgatggtgtccataaaacatataaaagatgttacctcgt |
37244838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 37283579 - 37283302
Alignment:
| Q |
12 |
agagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccaaggtttttcacaatagtacttcatattcgtcatca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | ||| || | ||||| || | ||| |
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| T |
37283579 |
agagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccacggcttcttacagtaagaaatcatactctttgtca |
37283480 |
T |
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| Q |
112 |
ccatatcaagttcaccattgcgatccatggagatttctttggccaatgagttgaacaatttggccacaagtttatcgttcccaagagcgttgattaggat |
211 |
Q |
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| T |
37283479 |
cctcttcaagttctccttcacgatccattgggatttcttttgccaaggagttgaacaatttggcaacagctttgtcactctcaagatagttgattatgat |
37283380 |
T |
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| Q |
212 |
cccacttctactaagaaatggaacgtcctgagcagtgtcgatgatggtgtccataaaacatataaaagatgttacctc |
289 |
Q |
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|||||||| | |||| || |||||| |||| |||| ||||| ||||| ||||| |||| ||||||| ||||||| |
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| T |
37283379 |
cccacttcggatgagaattgcaacgtctacagcactgtcaatgatagtgtctataaagcatacaaaagatattacctc |
37283302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 37319326 - 37319047
Alignment:
| Q |
12 |
agagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccaaggtttttcacaatagtacttcatattcgtcatca |
111 |
Q |
| |
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||||| || |||||||| ||||| ||||||||||||||||||||| | |||||||| |||||||| ||||| | || || | ||||| || || ||| |
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| T |
37319326 |
agagagacaatagcccacgggtttctaaaataagtttgaatgagattagcacgccatcttttccacggtttcttgcagtaatcactcatactcatcctca |
37319227 |
T |
|
| Q |
112 |
ccatatcaagttcaccattgcgatccatggagatttctttggccaatgagttgaacaatttggccacaagtttatcgttcccaagagcgttgattaggat |
211 |
Q |
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||| ||||||| | |||| ||||||| | || ||||| | ||| ||||| |||||||||| |||| ||||||| | |||||||| ||||||| ||| |
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| T |
37319226 |
ccacatcaagtactccatgacgatccactgttatgtctttagacaacgagttaaacaatttggaaacaactttatcgcttccaagagcattgattatgat |
37319127 |
T |
|
| Q |
212 |
cccacttctactaagaaatggaacgtcctgagcagtgtcgatgatggtgtccataaaacatataaaagatgttacctcgt |
291 |
Q |
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|||||||| |||||| || ||| ||| | |||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
37319126 |
cccacttcggttaagaagtgcaacatccacgttactgtcgatgatggtgtccataaagaatataaacgatgttacctcgt |
37319047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 37965782 - 37965712
Alignment:
| Q |
12 |
agagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccaaggttt |
82 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||||| |
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| T |
37965782 |
agagacaccatagcccaagggctcctaaaataagtacgaatgagactagcacgccatcttttccaaggttt |
37965712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 16571916 - 16571968
Alignment:
| Q |
15 |
gacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgcca |
67 |
Q |
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|||||||||| ||||||||||||||||||||| ||| ||||| | |||||||| |
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| T |
16571916 |
gacaccatagaccaagggttcctaaaataagtgtgagtgagattggcacgcca |
16571968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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