View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_109 (Length: 282)
Name: NF18178_low_109
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_109 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 45483545 - 45483813
Alignment:
| Q |
1 |
aaaggtgagacataagatggtgtatgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaa |
100 |
Q |
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| T |
45483545 |
aaaggtgagacataagatggtgtatgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaa |
45483644 |
T |
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| Q |
101 |
atgagctttgatatcataaaatcacgtgcactataaaaagtgtcatctaatcattcatattttattctttacccgtatagctagcttatggagcataann |
200 |
Q |
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| T |
45483645 |
atgagctttgatatcataaaatcacgtgcactataaaaagtgtcatctaattattcatattttattctttacccgtatagctagcttatggagcataatt |
45483744 |
T |
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| Q |
201 |
nnnnnnnnnnnnnnnnnngttctctgtcttaatggtctatggtttagtactatactagaaggaagaaga |
269 |
Q |
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| T |
45483745 |
tattttttgtgattttttgttctctgtcttaatggtctatggtttagtactatactagaaggaagaaga |
45483813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 29502151 - 29502232
Alignment:
| Q |
14 |
aagatggtgtatgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatccta |
95 |
Q |
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| T |
29502151 |
aagatgatttatgctagctccaaagataggttcaaaagggagcttgatgggatacaagttgagttgcaagctactgatccta |
29502232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 40864894 - 40864800
Alignment:
| Q |
14 |
aagatggtgtatgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaaatgagctt |
108 |
Q |
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| T |
40864894 |
aagatggtgtatgcaagttccaaggatagattcaagagagaattggatggcattcaagttgaactgcaagcaactgatccaagtgagatgagctt |
40864800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 36529073 - 36528992
Alignment:
| Q |
14 |
aagatggtgtatgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatccta |
95 |
Q |
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| T |
36529073 |
aagatgatttatgcaagctccaaagatagattcaagagagagcttgatggtattcagattgagttgcaagcaactgatccta |
36528992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 2791100 - 2791194
Alignment:
| Q |
14 |
aagatggtgtatgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaaatgagctt |
108 |
Q |
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| T |
2791100 |
aagatggtgtatgcaagttctaaggatagattcaagagggagttggatggcattcaagttgaactccaagcaactgatccaagtgagatgagctt |
2791194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 10635487 - 10635576
Alignment:
| Q |
14 |
aagatggtgtatgctagcaccaaggacagattcaagagggaacttgatggcattcaagttgagttgcaagcaacagatcctagtgaaatg |
103 |
Q |
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| T |
10635487 |
aagatgatttatgcaagcaccaaagaaaggttcaagagggagctggatggaattcaaatagagttgcaggcaactgatcctactgaaatg |
10635576 |
T |
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