View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_11 (Length: 675)
Name: NF18178_low_11
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 631; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Original strand, 16910932 - 16911578
Alignment:
| Q |
19 |
ggtaaagcacgtggtccatgcatggctacaaaccccattgacaggtgttggaggtgtgatcctaactgggcaaacaaccgccagaagcttgcagattgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16910932 |
ggtaaagcacgtggtccatgcatggctacaaaccccattgacaggtgttggaggtgtgatcctaactgggcaaacaaccgccagaagcttgcagattgtg |
16911031 |
T |
|
| Q |
119 |
tgaaaggtttcggaaggaagactactggtggaaaaggtggtcctatctatgtggtaacagacccctcagatagtgacatggtgaatccacgtcctggtac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911032 |
tgaaaggtttcggaaggaagactactggtggaaaaggcggtcctatctatgtggtaacagacccctcagatagtgacatggtgaatccacgtcctggtac |
16911131 |
T |
|
| Q |
219 |
ccttagattcggagttacaagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcacaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911132 |
ccttagattcggagttacaagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcacaag |
16911231 |
T |
|
| Q |
319 |
accattgatggaagaggagctgatgttaccattgctagtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatcaaaatttttg |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911232 |
accattgatggaagaggagctgatgttaccattgctagtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatcaaaatttttg |
16911331 |
T |
|
| Q |
419 |
acatcgtggttggaagtggtggacttattagagatggtcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttttggctctag |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911332 |
acatcgtggttggaagtggtggacttattagagatggtcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttttggctctag |
16911431 |
T |
|
| Q |
519 |
caatatttggattgaccatgtttccatgagaaactgtagggatggactagttgatgccattatgggatccactgctattaccatctccaatagccatttc |
618 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911432 |
caatatttggattgaccatgtttccatgagaaactgtagagatggactagttgatgccattatgggatccactgctattaccatctccaatagccatttc |
16911531 |
T |
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| Q |
619 |
acagatcacaacgaggtaattagtaattaattcaatagttacctatg |
665 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
16911532 |
acagatcacaacgaggtaattagtaattaattcgatagttacttatg |
16911578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 35 - 665
Target Start/End: Original strand, 16915353 - 16915983
Alignment:
| Q |
35 |
catgcatggctacaaaccccattgacaggtgttggaggtgtgatcctaactgggcaaacaaccgccagaagcttgcagattgtgtgaaaggtttcggaag |
134 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |
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| T |
16915353 |
catgcatggccacaaaccccattgataggtgttggaggtgtgatcctaactgggcaaacaaccgcaagaagcttgcagattgtgtgcaaggttttggaag |
16915452 |
T |
|
| Q |
135 |
gaagactactggtggaaaaggtggtcctatctatgtggtaacagacccctcagatagtgacatggtgaatccacgtcctggtacccttagattcggagtt |
234 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |||| |
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| T |
16915453 |
gaagactactggtggaaaagacggtcctatctatgtggtaactgacccctcagatagtgacttggtgaatccacgtcctggtacccttaggcatgcagtt |
16915552 |
T |
|
| Q |
235 |
acaagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcacaagaccattgatggaagag |
334 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||| ||| |
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| T |
16915553 |
acaagaaatgggcctttgtggatcatcttcgctcgtagcatgaagattaggctcaaccaggagctcataatggcaggtaacaagaccattgatggacgag |
16915652 |
T |
|
| Q |
335 |
gagctgatgttaccattgctagtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatcaaaatttttgacatcgtggttggaag |
434 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| |
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| T |
16915653 |
gagctgatgttaccattgctaatggtgctggtattactatccagttcatcgagaatgtgatcatccatgggatcaaaatttatgacattatggttggaag |
16915752 |
T |
|
| Q |
435 |
tggtggacttattagagatggtcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttttggctctagcaatatttggattgac |
534 |
Q |
| |
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|||||||||| |||||||| || ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
16915753 |
tggtggacttgttagagatagtgaggaccattatggtctaaggactattagtgatggtgatggaatttcaatttttggctcaagccatatttggattgac |
16915852 |
T |
|
| Q |
535 |
catgtttccatgagaaactgtagggatggactagttgatgccattatgggatccactgctattaccatctccaatagccatttcacagatcacaacgagg |
634 |
Q |
| |
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|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16915853 |
catgtttccatgagaaactgcagagatggactcattgatgccattatgggatccactgctattaccatctccaatagccatttcacagatcacaacgagg |
16915952 |
T |
|
| Q |
635 |
taattagtaattaattcaatagttacctatg |
665 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |
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| T |
16915953 |
taattagtaattaattcgatagttacttatg |
16915983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 7e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 137 - 317
Target Start/End: Complemental strand, 1872758 - 1872577
Alignment:
| Q |
137 |
agactactggt-ggaaaaggtggtcctatctatgtggtaacagacccctcagatagtgacatggtgaatccacgtcctggtacccttagattcggagtta |
235 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1872758 |
agactactggttggaaaaggcggtcctatctatgtggtaacagacccctcagatagtgacatggtgaatccacgtcctggtacccttagattcggagtta |
1872659 |
T |
|
| Q |
236 |
caagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcacaa |
317 |
Q |
| |
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| T |
1872658 |
caagaaatgggcctttgtggatcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcacaa |
1872577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 1872831 - 1872756
Alignment:
| Q |
19 |
ggtaaagcacgtggtccatgcatggctacaaaccccattgacaggtgttggaggtgtgatcctaactgggcaaacaaccgccaga |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
1872831 |
ggtaaagcacgtggtccatgcatggctacaaaccccattgacag---------gtgtgatcctaactgcgcaaacaaccgccaga |
1872756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 483 - 635
Target Start/End: Complemental strand, 25007205 - 25007053
Alignment:
| Q |
483 |
gagtgatggtgatggaatttcaatttttggctctagcaatatttggattgaccatgtttccatgagaaactgtagggatggactagttgatgccattatg |
582 |
Q |
| |
|
||||||||||||||| ||||| || ||||| |||| ||| |||||||||| ||||||||||||||||| |||| ||||| | ||||||| || ||| |
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|
| T |
25007205 |
gagtgatggtgatggtatttccatctttggtgctagtaatgtttggattgatcatgtttccatgagaaattgtactgatggtttgattgatgctataatg |
25007106 |
T |
|
| Q |
583 |
ggatccactgctattaccatctccaatagccatttcacagatcacaacgaggt |
635 |
Q |
| |
|
|| |||||||||||||||||||| || || || ||||| || ||||| ||||| |
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| T |
25007105 |
ggttccactgctattaccatctctaacagtcacttcactgaccacaatgaggt |
25007053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 25007653 - 25007554
Alignment:
| Q |
35 |
catgcatggctacaaaccccattgacaggtgttggaggtgtgatcctaactgggcaaacaaccgccagaagcttgcagattgtgtgaaaggtttcggaag |
134 |
Q |
| |
|
||||| |||| ||||| || |||||||| || ||||||||||| || || ||||| ||||||||||| ||||| ||||||||||| |||| |||||||| |
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| T |
25007653 |
catgcttggccacaaatcctattgacagatgctggaggtgtgacccaaattgggctaacaaccgccaaaagctagcagattgtgtccaaggattcggaag |
25007554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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