View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_110 (Length: 277)
Name: NF18178_low_110
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 25741461 - 25741699
Alignment:
| Q |
16 |
aatatggaatcaagtctcattgagacactttttggcttcattgaatgttatgaaataagaatgatgaaggggattgacatagtatagtatcttcatagct |
115 |
Q |
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| T |
25741461 |
aatatggaatcaagtctcattgagacactttttggcttcattgaatgttatgaaataagaatgatgaaggggattgacatag-----tatcttcatagct |
25741555 |
T |
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| Q |
116 |
tcttgtgtattcgcgcgatgtagatgattcgcatcgatccttgtattttctgcggaacttctaacttaagataattagtttccatttctcttccttgaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741556 |
tcttgtgtattcgcgcgatgtagatgattcgcatcgatccttgtattttctgcggaacttctaacttaagataattagtttccatttctcttccttgaat |
25741655 |
T |
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| Q |
216 |
tcctaatagaatcaaagcaatattaacaggcataggctcaagag |
259 |
Q |
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| T |
25741656 |
tcctaatagaatcaaagcaatattaacaggcataggctcaagag |
25741699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 25744995 - 25745143
Alignment:
| Q |
16 |
aatatggaatcaagtctcattgagacactttttggcttcattgaatgttatgaaa-taagaatgatgaaggggattgacatagtatagtatcttcatagc |
114 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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| T |
25744995 |
aatatggaatcaagtcttattgagacactttttggcttcattaaatgttatgaaagtaagaatgatgaagaggattgac-----ctagtatcttcatagc |
25745089 |
T |
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| Q |
115 |
ttcttgtgtattcgcgcgatgtagatgattcgcatcgatccttgtattttctgc |
168 |
Q |
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| T |
25745090 |
ttcttgtgtgttcgcgcaatatagatgattcgtgttgatccttgtattttctgc |
25745143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 25745220 - 25745307
Alignment:
| Q |
170 |
gaacttctaacttaagataattagtttccatttctcttccttgaattcctaatagaatcaaagcaatattaacaggcataggctcaag |
257 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| | | ||| || || |||||||||| |
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| T |
25745220 |
gaacttctaacttaagacaattagtttccatttctcttccttgtattcctaataaaatcaaagaatttttatcaagcgtaggctcaag |
25745307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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