View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_111 (Length: 273)
Name: NF18178_low_111
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_111 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 7626417 - 7626171
Alignment:
| Q |
11 |
gagatgaagaccaagccttcattcatgacgtgattacgtaccaattacatacatttcaatctctttgctaaagtccatagagaagtttcaacacaaccat |
110 |
Q |
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| T |
7626417 |
gagatgaagaccaagccttcattcatgacgtgattacgtaccaattatatacatttcaatctctttgctaaagtccatagagaagtttcaacacaaccat |
7626318 |
T |
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| Q |
111 |
taatttcaagaccagattctttcaaaataaatat-nnnnnnntttcaagaccatatcttcaagaccaccctttctcctaccactccatccgtttaactat |
209 |
Q |
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| T |
7626317 |
taaattcaagaccagattctttcaaaataaagataaaaaaaatttcaagaccatatcttcaagaccaccctttctcctaccactccatccgtttaactat |
7626218 |
T |
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| Q |
210 |
aaaagtcatattttaataaatgcacagtggttttatatataaacaat |
256 |
Q |
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| T |
7626217 |
aaaagtcatattttaataaatgcacagtggttttagatataaacaat |
7626171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 7656915 - 7656990
Alignment:
| Q |
152 |
tttcaagaccatatcttcaagaccaccctttctcctaccactccatccgtttaactataaaagtcatattttaata |
227 |
Q |
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| T |
7656915 |
tttcaagaccagatcttcaagaccaccatttctcctataactccatccgtttaactgtaaaagtcatatttcaata |
7656990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 7656864 - 7656928
Alignment:
| Q |
64 |
tttcaatctctttgctaaagtccatagagaagtttcaacacaaccattaa-tttcaagaccagat |
127 |
Q |
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| T |
7656864 |
tttcaacctctttgctaaaatccatattgaagtttcaaaataaccattaattttcaagaccagat |
7656928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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