View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_112 (Length: 269)
Name: NF18178_low_112
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 33389628 - 33389412
Alignment:
| Q |
11 |
cagagaggaagagaaaggtgagtctctttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggcttaaccgtcaacaacttcat |
110 |
Q |
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| T |
33389628 |
cagagaggaagagaaaggtgagtctcgttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggtttaaccgtcaacaacttcat |
33389529 |
T |
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| Q |
111 |
taaccgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcag |
210 |
Q |
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| T |
33389528 |
taaccgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcag |
33389429 |
T |
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| Q |
211 |
gttttgaaggataacca |
227 |
Q |
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| T |
33389428 |
gttttgaaggataacca |
33389412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 38781677 - 38781438
Alignment:
| Q |
11 |
cagagaggaagagaaaggtgagtctctttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggcttaaccgtcaacaacttcat |
110 |
Q |
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| T |
38781677 |
cagagagaaagaggaaggtgagtttattcgacgtcgtcgacgacg---ctgcagctaagatggtgaaaactaatggcggtttaattggtaacaatctcat |
38781581 |
T |
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| Q |
111 |
taaccgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcag |
210 |
Q |
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| T |
38781580 |
taaccgttggaatggaaaaccttactcgcaaaggtatcatgagattttggaaaagaggaaaacccttcctgtttggcatcagaaagaggatttcttgaag |
38781481 |
T |
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| Q |
211 |
gttttgaaggataaccagattttgattcttgttggtgaaactg |
253 |
Q |
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| T |
38781480 |
gttttgaaggataatcagactttgattcttgttggtgaaactg |
38781438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 20814138 - 20814362
Alignment:
| Q |
15 |
gaggaagagaaaggtgagtctctttgacgtcgtcgatgacgactctactgccaagatggtgaaaacaaacggtggcttaaccgtcaacaacttcattaac |
114 |
Q |
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||||||||||||||||||| | || || |||||||| |||||||||||| |||| ||||||||| ||||| || |||| || ||||||| |
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| T |
20814138 |
gaggaagagaaaggtgagtttattcgatgtcgtcga---cgactctactgctaagacggtgaaaaccaacggcggtttaatcggcaacaac--------- |
20814225 |
T |
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| Q |
115 |
cgttggaacagaaaaccttactcacaaaggtactatgaaatattggagaagaggaaaacccttccagtttggcaccagaaacaagattttttgcaggttt |
214 |
Q |
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|| |||||| ||||||||||||| | ||| |||| || || ||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||| |
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| T |
20814226 |
cgctggaacggaaaaccttactctccaagttacttcgagattttggagaagaggaaaacccttccggtttggcaccagaaagatgattttttgcagtttt |
20814325 |
T |
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| Q |
215 |
tgaaggataaccagattttgattcttgttggtgaaac |
251 |
Q |
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| T |
20814326 |
ttaaggataatcagattttaatcctcgttggtgaaac |
20814362 |
T |
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