View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_115 (Length: 265)
Name: NF18178_low_115
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_115 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 51211719 - 51211479
Alignment:
| Q |
18 |
atatccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatcatggttagatcaaatgatgctgcattcataccttgtctcccatggct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211719 |
atatccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatcatggttagatcaaatgatgctgcattcataccttgtctcccatggct |
51211620 |
T |
|
| Q |
118 |
tcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211619 |
tcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttga |
51211520 |
T |
|
| Q |
218 |
ggtataatgcccttattcttgcagcctgtctctcctctgtg |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51211519 |
ggtataatgcccttattcttgcagcctgtctctcccctgtg |
51211479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 51198118 - 51197960
Alignment:
| Q |
93 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
192 |
Q |
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|||| ||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||| |||| |||||||| ||||||||||| |
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| T |
51198118 |
cattaataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactc |
51198019 |
T |
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| Q |
193 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctc |
251 |
Q |
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| T |
51198018 |
acatcttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctctc |
51197960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 93 - 252
Target Start/End: Complemental strand, 51155603 - 51155444
Alignment:
| Q |
93 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
192 |
Q |
| |
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|||| ||||||| || |||||||| |||| ||| |||| ||||||||||||||| |||||||||||||| ||| |||| |||||||| |||||||| || |
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| T |
51155603 |
cattgataccttctcccccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctc |
51155504 |
T |
|
| Q |
193 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc |
252 |
Q |
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| ||||||||| ||||||| ||| |||||||| | || ||||||||| |||||||||| |
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|
| T |
51155503 |
acatcttgcctcaaaattgttttaaggtataaccctctaattcttgcactctgtctctcc |
51155444 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 252
Target Start/End: Complemental strand, 51144458 - 51144304
Alignment:
| Q |
98 |
ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatc |
197 |
Q |
| |
|
||||||| || |||||||| || | ||||||||| ||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||| | ||| |
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| T |
51144458 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
51144359 |
T |
|
| Q |
198 |
ttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc |
252 |
Q |
| |
|
|||||| ||||||| ||| || ||||| | || ||||||||| |||||||||| |
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|
| T |
51144358 |
ttgcctcaaaattgttttaagatataaccctctaattcttgcactctgtctctcc |
51144304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 252
Target Start/End: Original strand, 29938480 - 29938639
Alignment:
| Q |
93 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
192 |
Q |
| |
|
|||| ||||||| || |||||||| |||| ||||||||| || ||||||| ||| |||||||||||||| ||| | || ||||| || ||||| || || |
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| T |
29938480 |
cattgataccttctcccccatggcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctc |
29938579 |
T |
|
| Q |
193 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc |
252 |
Q |
| |
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| ||||||||| ||||||| ||| |||||||| | || ||||||||| |||||||||| |
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|
| T |
29938580 |
acatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctcc |
29938639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 63 - 252
Target Start/End: Original strand, 49738494 - 49738689
Alignment:
| Q |
63 |
ttgttatcatggttagatcaaatgatgctgcattcata------ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaaca |
156 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||| |
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| T |
49738494 |
ttgttatcatagttagatcaaatgattatgcattaatagaaataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaaca |
49738593 |
T |
|
| Q |
157 |
acctcaccactatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc |
252 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |
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| T |
49738594 |
acctcaacactgtttgtttccctgtcaaagaagcttatatcttgccttaaaattgctttgaggtataaggcccgtattcttgcagcttgtctctcc |
49738689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 36284848 - 36284720
Alignment:
| Q |
99 |
taccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgt---ttccttgtcaaagaaactgata |
195 |
Q |
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|||||| || ||||| || ||||||||||||| ||| |||| |||||| |||||||||||||| ||| |||| || |||| |||||||||| || || |
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| T |
36284848 |
taccttctcacccattgcatcttgaataagaattgtgtcacttgacatccttccaacaacctcgccagtattagtttcttccatgtcaaagaagctcgta |
36284749 |
T |
|
| Q |
196 |
tcttgccttaaaattgctttgaggtataa |
224 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |
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|
| T |
36284748 |
tcttgcctcaaaattgctctgaggtataa |
36284720 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 248
Target Start/End: Original strand, 38527178 - 38527331
Alignment:
| Q |
95 |
ttcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgat |
194 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||| |||||||| ||||||||||| ||||| || || | |||||||| || ||||||||| | | |
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|
| T |
38527178 |
ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaac |
38527277 |
T |
|
| Q |
195 |
atcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtct |
248 |
Q |
| |
|
|||||| ||||| |||| ||| | || ||| | |||||||||||||| ||||| |
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|
| T |
38527278 |
atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtct |
38527331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 38568478 - 38568632
Alignment:
| Q |
94 |
attcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactga |
193 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||| ||||||||||||||||| || | ||| || || | |||||||| || ||||||||| | | |
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|
| T |
38568478 |
attcataccttctcacccatggcatcttgaataagaacagtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaa |
38568577 |
T |
|
| Q |
194 |
tatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtct |
248 |
Q |
| |
|
|||||| ||||| |||| ||| | || ||| | |||||||||||||| ||||| |
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|
| T |
38568578 |
catcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtct |
38568632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 5821219 - 5821153
Alignment:
| Q |
101 |
ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccact |
167 |
Q |
| |
|
|||| ||||||||||| |||||||| |||| |||||||| ||||||||||||| |||||| ||||| |
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|
| T |
5821219 |
ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccact |
5821153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 5764298 - 5764242
Alignment:
| Q |
98 |
ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaa |
154 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||| ||| ||||| |||||||| |||| |
|
|
| T |
5764298 |
ataccttttctcccatggcatcttgaatgagaattgtgtcaccagacattctaccaa |
5764242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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