View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_119 (Length: 258)
Name: NF18178_low_119
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_119 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 43696478 - 43696253
Alignment:
| Q |
13 |
atactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcattaagttaattttata |
112 |
Q |
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| T |
43696478 |
atactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcattaagttaattttata |
43696379 |
T |
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| Q |
113 |
tccataagtggaaaggtgggaaataatagaaaaagtaaatctgtcccattgtgacctgaatgaagctgaatcaaatgtataatatatagtgcaaagatgg |
212 |
Q |
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| T |
43696378 |
tccataagtggaaaggtgggaaataatagaaaaagtaaatctgtcccattgtgacctgaatgaagctgaatcaaatgtata----atagtgcaaagatgg |
43696283 |
T |
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| Q |
213 |
gacatgctttctagcattattggactctat |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43696282 |
gacatgctttctagcattattggactctat |
43696253 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 32214076 - 32214108
Alignment:
| Q |
68 |
ttgcatgcttaacattctaaattatgtcattaa |
100 |
Q |
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| T |
32214076 |
ttgcatgcttaacattttaaattatgtcattaa |
32214108 |
T |
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