View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_12 (Length: 665)

Name: NF18178_low_12
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_12
NF18178_low_12
[»] chr3 (2 HSPs)
chr3 (67-203)||(52671106-52671241)
chr3 (593-645)||(34021004-34021056)
[»] chr2 (3 HSPs)
chr2 (320-494)||(14360724-14360902)
chr2 (569-649)||(14360574-14360654)
chr2 (613-649)||(11762386-11762422)
[»] chr5 (2 HSPs)
chr5 (266-323)||(17591229-17591286)
chr5 (234-271)||(36912920-36912957)
[»] chr4 (1 HSPs)
chr4 (266-323)||(19130239-19130296)
[»] chr7 (2 HSPs)
chr7 (266-323)||(14735503-14735560)
chr7 (234-271)||(14735440-14735477)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 52671106 - 52671241
Alignment:
Q  67 gtacttcaatcttcttt--atagttttgcttcagttttacttggaagaagagatatcatatgtaaaacaaaattaaaaaagtagagaagattatactagt 164  Q
    |||||||||||||||||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  52671106 gtacttcaatcttcttttaagagttttgcatcagttttacttggaagaagagatatcatatgtaaaacaaaattaaaaaagtagagaagatta---tagt 52671202  T
Q  165 tgacaacattatgtaaagcataataatggtaataatatg 203  Q
    || ||||||||||||||||||||||||||||||||||||    
T  52671203 tggcaacattatgtaaagcataataatggtaataatatg 52671241  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 645
Target Start/End: Complemental strand, 34021056 - 34021004
Alignment:
Q  593 gctaaagcaagtttcatcattttcttttacaatgacaaaacccaaaactcaaa 645  Q
    |||||||||||||||||| |||||||||| | ||| ||||  |||||||||||    
T  34021056 gctaaagcaagtttcatctttttcttttagagtgagaaaattcaaaactcaaa 34021004  T

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Target: chr2 (Bit Score: 86; Significance: 9e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 320 - 494
Target Start/End: Complemental strand, 14360902 - 14360724
Alignment:
Q  320 atcaactttgtctctctcattgcaagcaccctctttcagacttcaaatcctttctctttcaatgggtttgaaa----gcttaatattaataatcacaggg 415  Q
    ||||||||| |||||||  |||||||  ||||||||||||||||| ||| |||||||||||||||||||||||    |||||||| ||||||||| || |    
T  14360902 atcaactttatctctcttgttgcaaggtccctctttcagacttcatatcttttctctttcaatgggtttgaaattaagcttaatactaataatcagagag 14360803  T
Q  416 ctttgaagtaagaacataaagagttttcattcacaatcccaactcccaaagaaaccaaagccaaaagtatatcatattc 494  Q
     ||||||||||||||||||| ||| |  |||||||||| ||||||||||| ||||||||||||||| |||| |||||||    
T  14360802 ttttgaagtaagaacataaaaagtctctattcacaatctcaactcccaaataaaccaaagccaaaattataccatattc 14360724  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 569 - 649
Target Start/End: Complemental strand, 14360654 - 14360574
Alignment:
Q  569 tatcatagaaacatgatttccatagctaaagcaagtttcatcattttcttttacaatgacaaaacccaaaactcaaagaaa 649  Q
    ||||||||||||| ||||||||| ||| |||||||||||||  |||| ||||||||||| |||| ||||||||||||||||    
T  14360654 tatcatagaaacacgatttccatggctgaagcaagtttcatagtttttttttacaatgagaaaatccaaaactcaaagaaa 14360574  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 613 - 649
Target Start/End: Complemental strand, 11762422 - 11762386
Alignment:
Q  613 tttcttttacaatgacaaaacccaaaactcaaagaaa 649  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  11762422 tttcttttacaatgagaaaacccaatactcaaagaaa 11762386  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 17591286 - 17591229
Alignment:
Q  266 tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca 323  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  17591286 tcttccacccactatcacccttctctctcatccatgccacccaccaccagcaacatca 17591229  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 36912957 - 36912920
Alignment:
Q  234 tcttatgatagtctcttcacatttgaattttttcttcc 271  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  36912957 tcttatgatagtctcttcacacttgatttttttcttcc 36912920  T

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Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 19130296 - 19130239
Alignment:
Q  266 tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca 323  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  19130296 tcttccacccactatcacccttctctctcctccatgccacccaccacctgcaacatca 19130239  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 14735503 - 14735560
Alignment:
Q  266 tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca 323  Q
    ||||||||||||||||| | ||||||||| ||||||||| |||| |||||||||||||    
T  14735503 tcttccacccactatcatccttctctctcatccatgccacccactaccagcaacatca 14735560  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 14735440 - 14735477
Alignment:
Q  234 tcttatgatagtctcttcacatttgaattttttcttcc 271  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  14735440 tcttatgatagtctcttcacacttgatttttttcttcc 14735477  T

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