View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_121 (Length: 256)
Name: NF18178_low_121
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_121 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 25642587 - 25642360
Alignment:
| Q |
16 |
atctcaaccacagctcttaatgcctaataaagaggattctacctatcttgatatacaatagtaagtaagctggtttatcaaaaataaaatatcgaatcca |
115 |
Q |
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| T |
25642587 |
atctcaaccagagctcttaatgcctaataaagaggattctacctatcctgatatacaatagtaagtaagctggtttatcaaaaataaaatatcgaatcca |
25642488 |
T |
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| Q |
116 |
ctgaggctcatgcgatatcagaaccgttcaacaactaaaatcattttgagtgtgaaattaaaa--ttgtttgttcttgaatagatctttgtaatttatac |
213 |
Q |
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| T |
25642487 |
ctgaggctcatgcgatatcagaaccgttcaacaactaaaatcattttgagtgtgaaattaaaattttgtttgttcttgaatagatctttgtaatttatac |
25642388 |
T |
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| Q |
214 |
cataaaacaagaataaaaagattatatt |
241 |
Q |
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| T |
25642387 |
cataaaacaagaataaaaagattatatt |
25642360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 18997904 - 18997792
Alignment:
| Q |
86 |
tggtttatcaaaaa-taaaatatcgaatccactgaggctcatgcgat-atcagaaccgttcaacaactaaaatcattttgagtgtgaaattaaaa--ttg |
181 |
Q |
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| T |
18997904 |
tggtttatcaaaaaataaaatatcgaatccactaaaactcatgagcttatcatattccttcaacaactaacatcattttgagtatgaaattaaaagtttg |
18997805 |
T |
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| Q |
182 |
tttgttcttgaat |
194 |
Q |
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| T |
18997804 |
tttgttcatgaat |
18997792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 23182 - 23267
Alignment:
| Q |
76 |
gtaagtaagctggtttatcaaaaataaaatatcgaatccactgaggctcatgcgatatcagaaccgttcaacaactaaaatcattt |
161 |
Q |
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| T |
23182 |
gtaagtaagccggtttatcaaagataaaatatggaattcacagagactcgtgtgatatcagatccgttcaacaactaaaattattt |
23267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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