View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_123 (Length: 255)
Name: NF18178_low_123
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_123 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 32174535 - 32174304
Alignment:
| Q |
8 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcata |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32174535 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcata |
32174436 |
T |
|
| Q |
108 |
ttgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32174435 |
ttgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactcaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
32174336 |
T |
|
| Q |
208 |
gttactccagctgaaattgcagaagagctaac |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
32174335 |
gttactccagctgaaattgcagaagagctaac |
32174304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 32206885 - 32207116
Alignment:
| Q |
8 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |
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| T |
32206885 |
gagaagaacacataattgtattcacaacaaatcacaaagacaagcttgatcctgctctgctaagacctggtagaatggacaagcaaattcacttgtcata |
32206984 |
T |
|
| Q |
108 |
ttgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
207 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
32206985 |
ttgcaacttttctgctttgaagcaattggttgttaactacctttgcattactcaacatgaactctttgaagagattgaagtgcttctaggagaagttcaa |
32207084 |
T |
|
| Q |
208 |
gttactccagctgaaattgcagaagagctaac |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
32207085 |
gttactccagctgaaattgcagaagagctaac |
32207116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 32182621 - 32182390
Alignment:
| Q |
8 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcata |
107 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
32182621 |
gagaggaacacataattgttttcacaacaaatcacaaagaaaggcttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcata |
32182522 |
T |
|
| Q |
108 |
ttgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
32182521 |
ttgcaacttttctggttttaagcaattggttgttaactacctttgcattactgaacatgaactctttgaaaagattgaagtgcttctaggagaagttcaa |
32182422 |
T |
|
| Q |
208 |
gttactccagctgaaattgcagaagagctaac |
239 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |
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|
| T |
32182421 |
gttactccggctgaaattggagaagagctaac |
32182390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 32110575 - 32110351
Alignment:
| Q |
8 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcata |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
32110575 |
gagaagaacacataattgttttcacaacaaatcacaaagacagacttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcata |
32110476 |
T |
|
| Q |
108 |
ttgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |
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|
| T |
32110475 |
ttgcaacttttctgcttttaagcaattggttgttaactacctttgtattactgaacatgaactctttgaaaagattgaagttcttttaggagaagttcaa |
32110376 |
T |
|
| Q |
208 |
gttactccagctgaaattgcagaag |
232 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32110375 |
gttactccagctgaaattgcagaag |
32110351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 32157869 - 32157641
Alignment:
| Q |
8 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcata |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
32157869 |
gagaagaacacataattgttttcacaacaaatcacaaagacaggcttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcata |
32157770 |
T |
|
| Q |
108 |
ttgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
32157769 |
ttgcaacttttctgcttttaagaaattggttactaactacctttgcattactgaacatgaactctttgaaaagattgaagtgcttctaggagaagttcaa |
32157670 |
T |
|
| Q |
208 |
gttactccagctgaaattgcagaagagct |
236 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |
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|
| T |
32157669 |
gttactcctgctgaaattggagaagagct |
32157641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 32118839 - 32118608
Alignment:
| Q |
8 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |
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|
| T |
32118839 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctattaagacctggtagaatggacaagcacattcacttgtcata |
32118740 |
T |
|
| Q |
108 |
ttgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
32118739 |
ttgcaacttttctgcttttaagaaattggttattaactacctctgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaa |
32118640 |
T |
|
| Q |
208 |
gttactccagctgaaattgcagaagagctaac |
239 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
32118639 |
gttactccagctgaaattgctgaagagctaac |
32118608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 32211960 - 32212191
Alignment:
| Q |
8 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcata |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
32211960 |
gagaagaacacataattgttgtcacaacaaatcacaaagaaaggcttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcata |
32212059 |
T |
|
| Q |
108 |
ttgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||| ||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
32212060 |
ttgcaacttttctgcttttaagcaattggttattaactacctttgcattactcaacatgaactctttgaaaagattgaactgcttctaggagaagttcaa |
32212159 |
T |
|
| Q |
208 |
gttactccagctgaaattgcagaagagctaac |
239 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
32212160 |
gttactcctgctgaaattgcagaagagctaac |
32212191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 32156759 - 32156531
Alignment:
| Q |
8 |
gagaagaacacataattgtattcacaacaaatcacaaagacaggcttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcata |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
32156759 |
gagaagaacacataattgttttcacaacaaatcacaaagaaaggcttgatcctgctctattaaggcctggtagaatagacaagcagattcacttgtcata |
32156660 |
T |
|
| Q |
108 |
ttgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||| || | |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32156659 |
ttgcaacttttctgcttttaagaaattgattattaactacctttgcattactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaa |
32156560 |
T |
|
| Q |
208 |
gttactccagctgaaattgcagaagagct |
236 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
32156559 |
gttactcctgctgaaattgcagaagagct |
32156531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 32152639 - 32152455
Alignment:
| Q |
55 |
gatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcatattgcaacttttctgcttttaagcaattggttgtcaactacctctgcg |
154 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
32152639 |
gatcatgctctgttaaggcctggtaaaatggacaagcaaattcatttgtcatattgcaacttttctgcttttaagcaattggttgttaactacctttgca |
32152540 |
T |
|
| Q |
155 |
ttactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaagttactccagctgaaattgcagaagagctaac |
239 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32152539 |
ttactgaacatgaactctttgaaaagattgaagttcttttaggagaagttcaagttactcctgctgaaattgcagaagagctaac |
32152455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 2821156 - 2821312
Alignment:
| Q |
83 |
tggacaaacaaattcacttgtcatattgcaacttttctgcttttaagcaattggttgtcaactacctctgcgttactgaacatgaactctttgataagat |
182 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||| |||||||||||||||| ||||| |
|
|
| T |
2821156 |
tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacctttgcattactcaacatgaactctttgaaaagat |
2821255 |
T |
|
| Q |
183 |
tgaagtgcttctaggagaagttcaagttactccagctgaaattgcagaagagctaac |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821256 |
tgaagttcttctaggagaagttcaagttactccagctgaaattgcagaagagctaac |
2821312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 32147755 - 32147699
Alignment:
| Q |
183 |
tgaagtgcttctaggagaagttcaagttactccagctgaaattgcagaagagctaac |
239 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32147755 |
tgaagtgcttttaggagaagttcaagttactccagctgaaattgcagaagagttaac |
32147699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 32153506 - 32153462
Alignment:
| Q |
195 |
aggagaagttcaagttactccagctgaaattgcagaagagctaac |
239 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32153506 |
aggacaagttcaagttactccagctgaaattgtagaagagctaac |
32153462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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