View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_126 (Length: 252)
Name: NF18178_low_126
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_126 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 49425755 - 49425961
Alignment:
| Q |
27 |
tcaattgatgaaaaatgttttgagagatcaactactcgtttaatggaagtaagttgagtttttatgagcttggtgtttgtggcttttatgttttataaaa |
126 |
Q |
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| T |
49425755 |
tcaattgatgaaaaatgttt-gagatatcaactactcgtttaatggaagtaagttaagtttttatgagcttggtgtttgtggcttttatgttttatgaaa |
49425853 |
T |
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| Q |
127 |
taatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagtt |
226 |
Q |
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| T |
49425854 |
taatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagtt |
49425953 |
T |
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| Q |
227 |
gaaactat |
234 |
Q |
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| T |
49425954 |
gaaactat |
49425961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 49423669 - 49423805
Alignment:
| Q |
99 |
gtgtttgtggcttttatgttttataaaataatttgctcgagtacatgaagttgtaacatgacattgccaatatg-aattggcgaaatcttaagagcgtaa |
197 |
Q |
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| T |
49423669 |
gtgtctgttgcttttatatttcatgaaataatttgctcgagtgcatgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataa |
49423768 |
T |
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| Q |
198 |
gaaatgctatccctaatgtcttgaaagttgaaactat |
234 |
Q |
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| T |
49423769 |
aaaatgttatccctaatgtcttgaaagttgaatctat |
49423805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 43363344 - 43363255
Alignment:
| Q |
143 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatt |
235 |
Q |
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| T |
43363344 |
atgaagttgtaacatga--ttgcaaatgtgcaatggtgaaagcttaagagcataa-aaatgttatcccttatgtcttgaaagttgaatctatt |
43363255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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