View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_129 (Length: 249)
Name: NF18178_low_129
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_129 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 17209240 - 17209466
Alignment:
| Q |
1 |
tgagataactcttcaacttctgtgatggatcctttttataaaacataagttggatatattccctcaatgcaaataaccttttaatcatcattgtacgaca |
100 |
Q |
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| T |
17209240 |
tgagataactcttcaacttctgtgatgcatcctttttataaaacacaagt-ggatatattccctcaatgcaaataac-ttttaatcatcattgtacgaca |
17209337 |
T |
|
| Q |
101 |
cgagtcgtatttaagcaacatatatgaattggtcnnnnnnntaataatataagtaacatataagaaatttgatcaccgaagtcacgtatttttatatctt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17209338 |
cgagtcgtatttaagcaacatatatgaattagtcaaaa----aaaaatataaggaacatataagaaatttgatcaccgaagtcacgtatttttatatttt |
17209433 |
T |
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| Q |
201 |
tatcaattcaccaagtcatgtatagatgcacag |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17209434 |
tatcaattcaccaagtcatgtatagatgcacag |
17209466 |
T |
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