View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_13 (Length: 598)
Name: NF18178_low_13
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 112 - 587
Target Start/End: Original strand, 40376549 - 40377023
Alignment:
| Q |
112 |
gtaggtggatcttaagctaaaaatttgccgtggatcatcggtgaagagaattttggtacgagaagcaaatgcttattctgcaactcatgttattgttgga |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40376549 |
gtaggtggatcttaaactaaaaatttgccgtggatcatcggtgaagagaattttggtacgagaagcaaatgcttattctgcatctcatgttattgttgga |
40376648 |
T |
|
| Q |
212 |
agtgttcatggttttcatagaattcggtcatctagctctgtagctaagtattgtgctaaaaagttatccaaggactgttgtgttcttgctgtgaataatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376649 |
agtgttcatggttttcatagaattcggtcatctagctctgtagctaagtattgtgctaaaaagttatccaaggactgttgtgttcttgctgtgaataatg |
40376748 |
T |
|
| Q |
312 |
gaaaggttgtgtacaagcgtgacagcttggcagcatcaactgttgctgatgtacaaggttttggatttttcttagttttggttaatgtggatctcatgat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376749 |
gaaaggttgtgtacaagcgtgacagcttggcagcatcaactgttgctgatgtacaaggttttggatttttcttagttttggttaatgtggatctcatgat |
40376848 |
T |
|
| Q |
412 |
tcatgaactcaatttaatctacagttattgattttgnnnnnnnngcttttgaaagggtttgatcgtcaacgtggaaatggtttgcttggttcaattcaat |
511 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376849 |
tcatgaactcaatttaatttacagttattgattttg-tttttttgcttttgaaagggtttgatcgtcaacgtggaaatggtttgcttggttcaattcaat |
40376947 |
T |
|
| Q |
512 |
tgacacatggtttgcttggttcgattcaattgacactcagtaagaatacaaaagtacttaatgctgatactgatga |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376948 |
tgacacatggtttgcttggttcgattcaattgacactcagtaagaatacaaaagtacttaatgctgatactgatga |
40377023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 40376442 - 40376485
Alignment:
| Q |
5 |
cataaaatttaatattctcacctccaattatgatcctaataagc |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376442 |
cataaaatttaatattctcacctccaattatgatcctaataagc |
40376485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 10258082 - 10258182
Alignment:
| Q |
112 |
gtaggtggatcttaagctaaaaatttgccgtggatcatcggtgaagagaattttggtacgagaagcaaatgcttattctgcaactcatgttattgttgga |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || || |||| |||||||||||| |||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
10258082 |
gtaggtggatctgaagctaaaaatttgccggggttcgtcagtgaggagaattttggttagagaagcaaatgaatattgtgcaactcatgttatagttgga |
10258181 |
T |
|
| Q |
212 |
a |
212 |
Q |
| |
|
| |
|
|
| T |
10258182 |
a |
10258182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University