View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_135 (Length: 243)
Name: NF18178_low_135
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_135 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 1948308 - 1948099
Alignment:
| Q |
16 |
atcaagcaaatgtgcactttcggagactttaatacttggaaactcttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatc |
115 |
Q |
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| T |
1948308 |
atcaagcaaatgtgcactttcggagactttaatgcttggaaactcttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatc |
1948209 |
T |
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| Q |
116 |
aacatttcatcagcagcttcttttgacgagaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctca |
215 |
Q |
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| T |
1948208 |
aacatttcatcagcagcttcttttgacgagaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctca |
1948109 |
T |
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| Q |
216 |
acatcgcatt |
225 |
Q |
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|||||||||| |
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| T |
1948108 |
acatcgcatt |
1948099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 1978098 - 1978307
Alignment:
| Q |
16 |
atcaagcaaatgtgcactttcggagactttaatacttggaaactcttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatc |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1978098 |
atcaagcaaatgtgcactttcggagactttaatgcttggaaacttttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatc |
1978197 |
T |
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| Q |
116 |
aacatttcatcagcagcttcttttgacgagaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctca |
215 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||||| ||| |
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| T |
1978198 |
aacatttcatcagcagcttcttttgatgagagtttgaactcaagcaattttctcaaaaccattaatggaatttgattctcaagcataacaatgtctttca |
1978297 |
T |
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| Q |
216 |
acatcgcatt |
225 |
Q |
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|||| ||||| |
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| T |
1978298 |
acattgcatt |
1978307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 1985017 - 1985225
Alignment:
| Q |
20 |
agcaaatgtgcactttcggagactttaatacttggaaactcttcaatcatcttgaaaggtgaagtttgtttaaacaaacctataaacatgaaaatcaaca |
119 |
Q |
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||||||||||||| || |||||| ||| | ||| ||||||||| |||||| || |||||| | | ||||||||| | |||| |||| || ||||||| |
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| T |
1985017 |
agcaaatgtgcacactctaagacttgaatgttaggatactcttcaaacatcttaaagggtgaaatctctttaaacaaccttatacacatcaatatcaaca |
1985116 |
T |
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| Q |
120 |
tttcatcagcagcttcttttgacga---gaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctcaa |
216 |
Q |
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||||||||| ||||| ||| || |||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| || ||||| |
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| T |
1985117 |
catcatcagcattttcttctgatgaaaagaattttaactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctcaa |
1985216 |
T |
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| Q |
217 |
catcgcatt |
225 |
Q |
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|| ||||| |
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| T |
1985217 |
aattgcatt |
1985225 |
T |
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