View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_137 (Length: 241)
Name: NF18178_low_137
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_137 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33771555 - 33771329
Alignment:
| Q |
1 |
tgtgattgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttaccttaagaaactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33771555 |
tgtgattgaatattcgaagaaagtaagagatttaggctttacattctttgagatattctcagaagctttaggcctggatccttcttaccttaagaaattg |
33771456 |
T |
|
| Q |
101 |
gcctcaccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33771455 |
gcctcaccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttca |
33771356 |
T |
|
| Q |
201 |
tgacaattcttctacaagaccatattg |
227 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
33771355 |
tgacaattcttctacaagaccgtattg |
33771329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33768716 - 33768495
Alignment:
| Q |
1 |
tgtgattgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttaccttaagaaactg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||| |||||||||| ||||| | || |
|
|
| T |
33768716 |
tgtgattgaatattcaaagaaagtaagagctttaggcttgacaatctttgagctattctcagaagctttaggccttcatccttcttatcttaaagatttg |
33768617 |
T |
|
| Q |
101 |
gcctcaccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttca |
200 |
Q |
| |
|
|||| | ||||||| ||| || ||||||||||||||||||||| |||||||| ||||||||||||||| |||| || ||||| ||| ||| |||| |
|
|
| T |
33768616 |
gccttagactatggacaatttcttttgtgtcactactatcctccatgccctgaacccgaattaactatgggaacttctaagcacaccgatattgatttca |
33768517 |
T |
|
| Q |
201 |
tgacaattcttctacaagacca |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33768516 |
tgacaattcttctacaagacca |
33768495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33762122 - 33761896
Alignment:
| Q |
1 |
tgtgattgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttaccttaagaaactg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||| ||||| |||||||| ||| |||||||||||||||||| |||||||||| |||| ||| || |
|
|
| T |
33762122 |
tgtgattgaatattcaaagaaagtaagggctttaggccttacaatctttgagctatactcagaagctttaggccttcatccttcttatcttacaaaattg |
33762023 |
T |
|
| Q |
101 |
gcctcaccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttca |
200 |
Q |
| |
|
|||| || ||||||| ||| || |||||||||||||||| |||| |||||||| ||||||||||||||| |||| || ||||| ||| ||| |||| |
|
|
| T |
33762022 |
ctctcaacatatggacaatttcttctgtgtcactactatcctgcatgccctgaacccgaattaactatgggaacttcgaagcacaccgatattgatttca |
33761923 |
T |
|
| Q |
201 |
tgacaattcttctacaagaccatattg |
227 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
33761922 |
tgacaattcttctacaagaccagattg |
33761896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 49464458 - 49464365
Alignment:
| Q |
129 |
gtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagacca |
222 |
Q |
| |
|
|||||| |||||| || || ||||||||||| ||||||||||| || |||| || |||||| || ||||||||||| | |||||||||||||| |
|
|
| T |
49464458 |
gtcactgctatccaccgtgccctgaacctgagttaactatgggcactacaaagcatactgatagtaacttcatgacattacttctacaagacca |
49464365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 28690708 - 28690664
Alignment:
| Q |
128 |
tgtcactactatcctccatgtcctgaacctgaattaactatggga |
172 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
28690708 |
tgtcactattaccctccatgtcctgaacctgaattaactatggga |
28690664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 19846022 - 19846097
Alignment:
| Q |
129 |
gtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgac |
204 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||||||||||| | | ||| || ||||||||| |||||||||| |
|
|
| T |
19846022 |
gtcactactttccgccatgccctgaacctgaattaactatgggtgttggaaaacatactgatggtaacttcatgac |
19846097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 19890978 - 19891020
Alignment:
| Q |
129 |
gtcactactatcctccatgtcctgaacctgaattaactatggg |
171 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19890978 |
gtcattactatccagcatgtcctgaacctgaattaactatggg |
19891020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 1094176 - 1094218
Alignment:
| Q |
129 |
gtcactactatcctccatgtcctgaacctgaattaactatggg |
171 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1094176 |
gtcacttctatccaccatgccctgaacctgaattaactatggg |
1094218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 26170986 - 26171068
Alignment:
| Q |
137 |
tatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaaga |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| || || | ||||||||| || ||||||||||| |||||||||| |
|
|
| T |
26170986 |
tatccaccatgtcctgaacctgaattaaccatgggtgcgtccacacacactgatcctgctttcatgacaatagttctacaaga |
26171068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University