View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_142 (Length: 237)
Name: NF18178_low_142
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_142 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 40882641 - 40882468
Alignment:
| Q |
17 |
atattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcgaatatagttcagacaaatacacattcgagacttaaaaaagaaccgcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40882641 |
atattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcgaatatagttcagacaaatacacattcgagacttaaaaaagaaccgcc |
40882542 |
T |
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| Q |
117 |
tcttatcagagagacaaaagaaaaacgagggtcggaagtaaagagagaagaagcagacaaggaaaatggtagtg |
190 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40882541 |
tcttatcagagagacagaagaaaaacgagggtcggaagtaaagagagaagaagcagacaaggaaaatggtagtg |
40882468 |
T |
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Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 8909361 - 8909570
Alignment:
| Q |
17 |
atattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcgaatatagttcagacaaatacacattcgagacttaaaaaagaaccgcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||| ||| |
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| T |
8909361 |
atattgattcttcataaatatcatatttttccattgtcaagaaattcaaagcgaatatagttcagacaaatacacattcaagacatcaaaaagaactgcc |
8909460 |
T |
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| Q |
117 |
tcttatcagagagacaaaagaaaaacgagggtcggaagtaaagagagaagaagcagacaaggaaaatggtagtg-nnnnnnnggccacggaatcactctt |
215 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
8909461 |
acttatcagagagacagaagaaaaacgagggtcagaagtaaagagagaagaagcagacaaggaaaatggtagtgaaaaaaaaggccacggaatcactgtt |
8909560 |
T |
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| Q |
216 |
atcctttgct |
225 |
Q |
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|||||||||| |
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| T |
8909561 |
atcctttgct |
8909570 |
T |
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