View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_148 (Length: 236)
Name: NF18178_low_148
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_148 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4263324 - 4263099
Alignment:
| Q |
1 |
attcatttccgtgttcattttgcaaccaattcaatatgttttataatatgaagcctaatgagtatcaatacactctctatatctgctgtgaatatgattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4263324 |
attcatttccgtgttcattttgcaaccaattcaatatgttttataatatgaagcctaatgagtatcaatacactctctatatctgttgtgaatatgattt |
4263225 |
T |
|
| Q |
101 |
gaaccatgacaccctctgatttctatcaaactctgtataggaggtggcaggtgatgaaactcaagtgttggatcttgaggggaaagttgtggttcctgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4263224 |
gaaccatgacaccctctgatttctatcaaactctgtataggaggtggcaggtgatgaaactcaagtgttggatcttgaggggaaagttgtggttcctgga |
4263125 |
T |
|
| Q |
201 |
tttattgattcacatgttcacttcat |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4263124 |
tttattgattcacatgttcacttcat |
4263099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University