View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_149 (Length: 236)
Name: NF18178_low_149
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_149 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 26846901 - 26846679
Alignment:
| Q |
14 |
caaaagaagcatcaaaaaggtcctccatgcagtaaccaggaatcgtttcaattaagtattcggaaatgctactggttgaaactgtgtcacaaaccatgtt |
113 |
Q |
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| T |
26846901 |
caaaagaagcatcaaaaaggtcctccatgcagtaaccaggaatcgtttcaatcaagtattcggaaatgctactggttgaaactgtgtcacaaaccatgtt |
26846802 |
T |
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| Q |
114 |
ctctttgaatgaactttgagaacaactattattttcacttgaaaatgaacttggtcttggacttgaggttcttagttctgagccattggaaattgttgga |
213 |
Q |
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| T |
26846801 |
ctctttgaatgaactttgagaacaactattattttcacttgaaaatgaacttggtcttggacttgaggttcttagttctgagccattggaaattgttgga |
26846702 |
T |
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| Q |
214 |
tttgaacaagaagaagaagcacc |
236 |
Q |
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| T |
26846701 |
tttgaacaagaagaagaagcacc |
26846679 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 54881503 - 54881424
Alignment:
| Q |
16 |
aaagaagcatcaaaaaggtcctccatgcagtaaccaggaatcgtttcaattaagtattcggaaatgctactggttgaaac |
95 |
Q |
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| T |
54881503 |
aaagaagcatcaagaaggtcttcaaaacagtaaccaggtattgtttcaatcaagtattcagaaatgctgcttgttgaaac |
54881424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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