View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_15 (Length: 581)
Name: NF18178_low_15
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 41846056 - 41846611
Alignment:
| Q |
18 |
ctattaagctaagcaatcttcagtcgtggcaagtgaaggtgaaagtgaattgcgagattcatcataatcctctcttagaggagattgttccaccctaata |
117 |
Q |
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| T |
41846056 |
ctattaagctaagcaatcttcagtcgtggcaagtgaaggtgaaagtgaatcgcgagattcatcataatcctctcttagaggagattgttccaccctaata |
41846155 |
T |
|
| Q |
118 |
tcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846156 |
tcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcct |
41846255 |
T |
|
| Q |
218 |
caatgttcttgtacctcaaaagttcttgatcaaacacctctgatgtccactcatccttcacaacagaccgaacccattttggaagatcagcttcttgttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846256 |
caatgttcttgtacctcaaaagttcttgatcaaacacctctgatgtccactcatccttcacaacagaccgaacccattttggaagatcagcttcttgttc |
41846355 |
T |
|
| Q |
318 |
ttcaaattccacgcaagagcgaactcctacgggagaagaatactgagaggaaggagctcttcctgtcaaaatttccaacaccaatactccaaaagcatac |
417 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41846356 |
ttcaaattccacgcaagagcgaactcctactggagaagaatactgagaggaaggagctcttcctgtcaaaacttccaacaccaatactccaaaagcatac |
41846455 |
T |
|
| Q |
418 |
acgtctgcctcttgtgaaagcttcttagcttccgcctgttctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataatagtgaca |
517 |
Q |
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| T |
41846456 |
acgtctgcctcttgtgaaagcttcttagcttccgcctgttctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataacagtgaca |
41846555 |
T |
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| Q |
518 |
aaccaaagtcacctatgcaagcaaccccattcttgtcaagtatcacatttgatgat |
573 |
Q |
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| T |
41846556 |
aaccaaagtcacctatgcaagcaaccccattcttgtcaagtatcacatttgatgat |
41846611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 33 - 305
Target Start/End: Complemental strand, 26890927 - 26890655
Alignment:
| Q |
33 |
atcttcagtcgtggcaagtgaaggtgaaagtgaattgcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatctta |
132 |
Q |
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||||||||| |||| || ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||| ||||| || |||||||| ||||| ||| |
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| T |
26890927 |
atcttcagtggtgggaatggaaggtgaaagcgaattgcgtgattcgtcatagtcctcacacagaggagattgctccactctgatatcctcaatcatttta |
26890828 |
T |
|
| Q |
133 |
acaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacc |
232 |
Q |
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| T |
26890827 |
acaacatctaccatagttggcctcttctctggctgctgcaccacacaagccaacccaacatgcagcattgacacaagctcttcctcaatgttcttgtatc |
26890728 |
T |
|
| Q |
233 |
tcaaaagttcttgatcaaacacctctgatgtccactcatccttcacaacagaccgaacccattttggaagatc |
305 |
Q |
| |
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|| ||||||||||||||| ||||| |||||||| || |||| || || ||||||||||| |||||||| |
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| T |
26890727 |
gcagaagttcttgatcaaaaacctccccagtccactcttctctcacgactgatcgaacccatttgggaagatc |
26890655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 573
Target Start/End: Complemental strand, 26890507 - 26890387
Alignment:
| Q |
453 |
ctgttctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataatagtgacaaaccaaagtcacctatgcaagcaaccccattcttg |
552 |
Q |
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|||||| || || ||||||||||||| | |||| ||| ||| |||||||||| | ||||||||| ||||||||| |||||||||||| || |||||| |
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| T |
26890507 |
ctgttcaggtgctctgtacccacccaatcgtgcagttgcatgaacagggtttaacagtagtgacaacccaaagtcagatatgcaagcaacaccgttcttg |
26890408 |
T |
|
| Q |
553 |
tcaagtatcacatttgatgat |
573 |
Q |
| |
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||||||| ||||| |||||| |
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| T |
26890407 |
tcaagtagtacattggatgat |
26890387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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