View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_151 (Length: 232)
Name: NF18178_low_151
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_151 |
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| [»] scaffold0048 (3 HSPs) |
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| [»] scaffold0185 (1 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 60648 - 60451
Alignment:
| Q |
19 |
atgctcattatggtacttcactttctatacatccatgtattttgggccatatagcaacatcttttggcagctatagtttgagttgctaagagagaaaagg |
118 |
Q |
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| T |
60648 |
atgctcattatggtacttcactttctatacatccatgtattttgcgccatatagcaacatcttttggcagatatagtttgagttccaaagagagaaaagg |
60549 |
T |
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| Q |
119 |
aagatccatattgaagtcagaaaaattccaaatagtttcctgaaaaacaccgtaaatactaagcttattagaaccaaacacattgcataaaactcaaa |
216 |
Q |
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| T |
60548 |
aagatccatatcgatgtcaaaaaaataccaaatattttcccaaaaaacacagtaaatactaagcttatgagtaccaaagaaattgcataaaactcaaa |
60451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 65 - 218
Target Start/End: Original strand, 85236 - 85389
Alignment:
| Q |
65 |
ccatatagcaacatcttttggcagctatagtttgagttgctaagagagaaaaggaagatccatattgaagtcagaaaaattccaaatagtttcctgaaaa |
164 |
Q |
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| T |
85236 |
ccatatggcaacatctttcggcacctatagtttgagttgcaaagagagaaaaggaagatccatattgaagtcagaaaaattccaaatagtttcccgaaaa |
85335 |
T |
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| Q |
165 |
acaccgtaaatactaagcttattagaaccaaacacattgcataaaactcaaact |
218 |
Q |
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| T |
85336 |
acacagtaaatactaagcttattagaaccaaacaaattgcacgaaactcaaact |
85389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 48017 - 47845
Alignment:
| Q |
46 |
tacatccatgtattttgggccatatagcaacatcttttggcagctatagtttgagttgctaagagagaaaaggaagatccatattgaagtcagaaaaatt |
145 |
Q |
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| T |
48017 |
tacatccatgtactttggaccatatagcaacatcttttggcatctatagtttgagttccaaagagagaaaaggaagatcgaaattgaagtaaaaaatatt |
47918 |
T |
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| Q |
146 |
ccaaatagtttcctgaaaaacaccgtaaatactaagcttattagaaccaaacacattgcataaaactcaaact |
218 |
Q |
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| T |
47917 |
ccaaatagtttcccaaaaaacaccataaatactaatcttatgagaaccaaacaaattgcatgaaactcaaact |
47845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 7316 - 7106
Alignment:
| Q |
19 |
atgctcattatggtacttcactttcta-----------tacatccatgtattttgggccatatagcaacatcttttggcagctatagtttgagttgctaa |
107 |
Q |
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| T |
7316 |
atgctcattatggtacttcactttctataccgaccctttacatccatgtactttggaccatatagcaacatcttttggcagctatagtttgagttgcaaa |
7217 |
T |
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| Q |
108 |
gagagaaaaggaagatccatattgaagtcagaaaaattccaaatagtttcctgaaaaacaccgtaaatactaagcttattagaaccaaacacattgcata |
207 |
Q |
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| T |
7216 |
gagagaaaaggaagatccatattgatgtcaaaaaaattccaaatagtttcccaaaacacaccgtaaatactaagcttatgagaaccaaccacattgcata |
7117 |
T |
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| Q |
208 |
aaactcaaact |
218 |
Q |
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| T |
7116 |
aaactcaaact |
7106 |
T |
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