View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_153 (Length: 227)

Name: NF18178_low_153
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_153
NF18178_low_153
[»] chr3 (8 HSPs)
chr3 (19-214)||(53515222-53515417)
chr3 (37-166)||(53526541-53526670)
chr3 (37-164)||(53526306-53526433)
chr3 (21-159)||(53526061-53526199)
chr3 (33-166)||(53526419-53526553)
chr3 (33-157)||(53526654-53526778)
chr3 (89-166)||(53526240-53526318)
chr3 (19-127)||(53550137-53550245)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 53515222 - 53515417
Alignment:
Q  19 atttcagtccattgatccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53515222 atttcagtccattgatccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatca 53515321  T
Q  119 aacagaataccactcactttatgatgttttcatccttcctttccgtcagtaatactaataagccggtctttctctcaaccttgttattcttctcac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53515322 aacagaataccactcactttatgatgttttcatccttcctttccgtcagtaatactaataagccggtctttctctcaaccttgttattcttctcac 53515417  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 53526541 - 53526670
Alignment:
Q  37 ttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcact 136  Q
    |||||||||||||||||||||   ||||| ||||||||||| |||| || | ||||| || |||||||||||||||||||||| ||||||||||||||||    
T  53526541 ttcctttccgtcaaactgaaacaaattccagaggcaacaatcacaaaacatgaaagaataaacacatttcaaatcaaaatcaatcagaataccactcact 53526640  T
Q  137 ttatgatgttttcatccttcctttccgtca 166  Q
     ||||| |||||||||||||| ||||||||    
T  53526641 ctatgaagttttcatccttccgttccgtca 53526670  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 53526306 - 53526433
Alignment:
Q  37 ttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcact 136  Q
    |||||||||||||||||||||   ||||| ||||||||||| | || || | |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  53526306 ttcctttccgtcaaactgaaacagattccagaggcaacaatcaaaaaacatgaaagattaaacacatttcaaatcaaaatcaaacaaaataccactcact 53526405  T
Q  137 ttatgatgttttcatccttcctttccgt 164  Q
     ||||  |||||||||||||||||||||    
T  53526406 ctatgtagttttcatccttcctttccgt 53526433  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 53526061 - 53526199
Alignment:
Q  21 ttcagtccattgatccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaa 120  Q
    ||||||||| |||||||||||||||| ||||||||||   ||||||| ||||||||| |||| || | ||||| || ||| |||||||||||||||||||    
T  53526061 ttcagtccactgatccttcctttccgacaaactgaaacaaattccgggggcaacaatcacaaaacatgaaagaataaacatatttcaaatcaaaatcaaa 53526160  T
Q  121 cagaataccactcactttatgatgttttcatccttcctt 159  Q
     |||||| |||||||| || || ||||||||||||||||    
T  53526161 tagaatatcactcactctacgaagttttcatccttcctt 53526199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 53526419 - 53526553
Alignment:
Q  33 atccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaat-accac 131  Q
    ||||||||||||||| ||||||||||| ||||| |||||| || | |||| ||   |||||||| ||||||||||||||||||||||| ||||| |||||    
T  53526419 atccttcctttccgttaaactgaaatgaattccagaggcagcagtcacaaaacacgaaagattaaacacatttcaaatcaaaatcaaatagaataaccac 53526518  T
Q  132 tcactttatgatgttttcatccttcctttccgtca 166  Q
    ||||| ||||| ||||| ||| |||||||||||||    
T  53526519 tcactctatgaagtttttatcattcctttccgtca 53526553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 53526654 - 53526778
Alignment:
Q  33 atccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccact 132  Q
    |||||||| |||||||||||||||| | ||| ||| |||| |||| |||   | | |||||||| |||||||| ||||||||||||||||||||||||||    
T  53526654 atccttccgttccgtcaaactgaaacgaatttcgggggcagcaatcacacatcatgaaagattaaacacatttgaaatcaaaatcaaacagaataccact 53526753  T
Q  133 cactttatgatgttttcatccttcc 157  Q
    |||| ||||| ||||| ||||||||    
T  53526754 cactctatgaagtttttatccttcc 53526778  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 53526240 - 53526318
Alignment:
Q  89 aaagattatacacatttcaaatcaaaatcaaacagaat-accactcactttatgatgttttcatccttcctttccgtca 166  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||| | | |||||||||||||    
T  53526240 aaagattaaacacatttcaaatcaaaatcaaacagaataaccactcactctatgaagtttttagcattcctttccgtca 53526318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 53550137 - 53550245
Alignment:
Q  19 atttcagtccattgatccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatca 118  Q
    ||||||||||| || |||||| |||||| || |||||||   ||||| || ||| || | |||| || | ||| |||| ||||||| ||||||| |||||    
T  53550137 atttcagtccactgctccttcttttccgccagactgaaaccaattccagaagcagcagtcacaaaacatgaaaaattaaacacattccaaatcagaatca 53550236  T
Q  119 aacagaata 127  Q
    |||||||||    
T  53550237 aacagaata 53550245  T

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