View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_157 (Length: 225)
Name: NF18178_low_157
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_157 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 3000388 - 3000577
Alignment:
| Q |
20 |
gtaataagtagctgaaaaggtggattaacaagtttaataaccattaaatcattatcaaaacaaatctatacacatttaacacaaacacaagtttaataat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3000388 |
gtaataagtagctgaaaaggtggattaacaagtttaataaccattaaatcattatcaaaacaaatctatacacatttaacacaaacacaagtttaataat |
3000487 |
T |
|
| Q |
120 |
cttaacataatcttaagatgaggaattattaccgtacaatctgaggaacagagaaaagaggatgctccttaatttgatgatgttgttctt |
209 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3000488 |
cttaatataatcttaagatgaggaattattaccgtgcaatctgaggaacagagaaaagaggatgctccttaatttgatgatgttgttctt |
3000577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University