View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_159 (Length: 220)
Name: NF18178_low_159
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_159 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 3609065 - 3608853
Alignment:
| Q |
12 |
tttccatcctctcagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcac |
111 |
Q |
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| T |
3609065 |
tttccatcctctcagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcac |
3608966 |
T |
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| Q |
112 |
ggagacaatttccacatattttccatgtcttctttaattggtaaattttccaattatgagtttgagggggatattagatatatatagtta----gttaat |
207 |
Q |
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| T |
3608965 |
ggagacaatttccacatattttccatgtcttctttaattagtaaattttccaattatgagtttgagggggatattagatatatatagttagttagttaat |
3608866 |
T |
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| Q |
208 |
tagagttttttat |
220 |
Q |
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| T |
3608865 |
tagagttttttat |
3608853 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 15584900 - 15584992
Alignment:
| Q |
24 |
cagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcacggagacaa |
119 |
Q |
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| T |
15584900 |
cagaacaaaaacttggatccaaatttaagggttaaagaagaa---gtggcttccttggagagataccacattttgctgccaatgtcacggagacaa |
15584992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 15551278 - 15551339
Alignment:
| Q |
24 |
cagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagag |
85 |
Q |
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| T |
15551278 |
cagaacagcaacttggattcaaaattaagaattaaataagaaatagtggcttcctaggagag |
15551339 |
T |
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