View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_16 (Length: 572)
Name: NF18178_low_16
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 556
Target Start/End: Original strand, 29525660 - 29526200
Alignment:
| Q |
16 |
cagagattgttaacaaagttcagataattgttttcccacatccctgagatatataattgagcttttacacatctagagcaccatcattgattctccttta |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29525660 |
cagagattgttaacaaaattcagataattgttttcccacatccctgagatatataattgagtttttacacatctagagcaccatcattgattctccttta |
29525759 |
T |
|
| Q |
116 |
agaatcagtatgaatccctcaatcaatactcttaccatttcttgctgttaatcttatctgattcttagcactcgaggtatgaaaattaataatgaataat |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29525760 |
agaatcactatgaatccctcaatcaatactcttaccatttcttgcggttaatcttatctgattcttagcactcaaggtatgaaaattaataatgaataat |
29525859 |
T |
|
| Q |
216 |
tttctctcctaagactttatatatagccattagccaaagtacaagttagttacaaccacactaacagaaaacaattaactgccaagcttgattgggaagg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29525860 |
tttctctcctaagactttatatatagccattagccaaagtagaagttagttacaaccacattaacagaaaacaattaactgccaagcttgattgggaagg |
29525959 |
T |
|
| Q |
316 |
cacacaattagtaaggcaaagtgatttgcttcactgatcttcaaacaagtcagaccccttaagtaaatttaatcatcaattaacattgattcttagcaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29525960 |
cacacaattagtaaggcaaagtgatttgcttcactgatcttcaaaaaagtcagaccccttaagtaaatttaatcatcaattaacattgattcttagcaaa |
29526059 |
T |
|
| Q |
416 |
tctcgaaaatgtttaataaaaaatgtttaaatttgctaagaggaatcggtttggtgatcatatctgcaggattgtactaagtatggaactcgaccacatc |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29526060 |
tctcgaaaatgtttaataaaaaatgtttaaatttgctaagaggaatcggtttagtgatcatatctgcaggattgtactaagtatggaacttgaccacatc |
29526159 |
T |
|
| Q |
516 |
aatcaatttaannnnnnnncaataacatctcttatgaaatc |
556 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
29526160 |
aatcaatttaattttttttcaataacatctcttatgaaatc |
29526200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University